Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1084
         (417 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical pr...    32   0.15 
L11247-8|AAY86263.1|  196|Caenorhabditis elegans Hypothetical pr...    31   0.44 
AF100305-1|AAC68918.1|  197|Caenorhabditis elegans Hypothetical ...    28   2.4  
U55856-3|AAA98022.2|  472|Caenorhabditis elegans Hypothetical pr...    28   3.1  
U00055-6|AAA50724.1|  494|Caenorhabditis elegans Hypothetical pr...    27   4.1  
AL161712-2|CAC70128.1|  313|Caenorhabditis elegans Hypothetical ...    27   4.1  

>U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical
           protein F35C8.5 protein.
          Length = 300

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = +2

Query: 128 WYSPVWLWPMAALNLQW--DTATPL--PEVTHEASALPLSAADTELCYWWSFWIPRWPFW 295
           W   +W++PMA + L W  DT  P+  P V    S L +     +  Y+W  +I     W
Sbjct: 98  WNQLLWIYPMALVQLIWVPDTELPILAPTVFEMLSQLAIFFLAFDFTYFWFHYINHKVKW 157


>L11247-8|AAY86263.1|  196|Caenorhabditis elegans Hypothetical
           protein F09G8.10 protein.
          Length = 196

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = -1

Query: 414 PNPNPASP----QKLKPLAAAKGESTTGDRVHQKSVRRQGKCCLQKGHLGI 274
           P P P  P    QK+ P+       T  D++H++   +QG C   K   G+
Sbjct: 137 PPPKPQKPKLPSQKIAPITVQPTIVTIPDKIHKEGKEQQGACAYCKRECGL 187


>AF100305-1|AAC68918.1|  197|Caenorhabditis elegans Hypothetical
           protein W04B5.4 protein.
          Length = 197

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 387 KLKPLAAAKGESTTGDRVHQKSVRRQGKC-CLQKGHLGIQND 265
           +L+P+    G   T D +   S+   G+C  +Q GH+  +ND
Sbjct: 113 ELRPVEFKNGVEPTEDDIFSTSLAPNGQCEVIQGGHVASEND 154


>U55856-3|AAA98022.2|  472|Caenorhabditis elegans Hypothetical
           protein F31E8.5 protein.
          Length = 472

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 194 LPEVTHEASALPLSAADTELCYWWSFWIPRWP 289
           +P   H ++A  +    T  C+W+  WI + P
Sbjct: 312 IPNDQHVSNAYKMFTLSTNKCHWFRLWITQLP 343


>U00055-6|AAA50724.1|  494|Caenorhabditis elegans Hypothetical
           protein R02F2.8 protein.
          Length = 494

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 248 ELCYWWSFWIPRWPFWRQH 304
           ELC+ W     RWP +R H
Sbjct: 74  ELCWTWKIMQNRWPEYRDH 92


>AL161712-2|CAC70128.1|  313|Caenorhabditis elegans Hypothetical
           protein Y66D12A.3 protein.
          Length = 313

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 200 EVTHEASALP-LSAADTELCYWWSFWIPRWPFWRQH 304
           E  H+      LSA  + +C W +FW P+  F++++
Sbjct: 85  EFLHDVEVFTTLSALRSVICQWTNFWGPKSQFFKKN 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,115,664
Number of Sequences: 27780
Number of extensions: 137281
Number of successful extensions: 393
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)