Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1084
         (417 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39080.1 68418.m04728 transferase family protein similar to a...    27   3.8  
At1g32340.1 68414.m03985 zinc finger (C3HC4-type RING finger) fa...    27   6.7  
At3g48510.1 68416.m05295 expressed protein                             26   8.9  
At1g51830.1 68414.m05843 leucine-rich repeat protein kinase, put...    26   8.9  
At1g48605.1 68414.m05436 halotolerance protein (HAL3B) contains ...    26   8.9  

>At5g39080.1 68418.m04728 transferase family protein similar to
           anthocyanin 5-aromatic acyltransferase from Gentiana
           triflora GI:4185599, malonyl CoA:anthocyanin
           5-O-glucoside-6'''-O-malonyltransferase from Perilla
           frutescens GI:17980232, Salvia splendens GI:17980234;
           contains Pfam profile PF02458 transferase family
          Length = 463

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
 Frame = +1

Query: 73  VSSKRISLVSSKH-KMRAFV-----VLACVAMAYG-RPEPPVGYSYS 192
           VSS   S  SSK  ++  FV     VL C+  A G  P  PVGY++S
Sbjct: 271 VSSSSSSTSSSKELRLSTFVIVYSYVLVCIIRARGGEPHRPVGYAFS 317


>At1g32340.1 68414.m03985 zinc finger (C3HC4-type RING finger)
           family protein contains a Zinc finger, C3HC4 type (RING
           finger) signature, PROSITE:PS00518
          Length = 688

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 13/55 (23%), Positives = 23/55 (41%)
 Frame = +2

Query: 113 KCALSWYSPVWLWPMAALNLQWDTATPLPEVTHEASALPLSAADTELCYWWSFWI 277
           KC L    P  L P   +++QW     +  +  +  +L       E+ Y W+ W+
Sbjct: 262 KCLLPKAYPSHLPPYFLISVQWMNPDKISSLCSKLDSLWSEQPGQEVLYQWTDWL 316


>At3g48510.1 68416.m05295 expressed protein
          Length = 294

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 408 PNPASPQKLKPLAAAKGESTTGDRVHQKSVRRQGKC 301
           P PASP  + P+++      + D   + + RR+ KC
Sbjct: 36  PKPASPGGVNPVSSGDSGGGSSDVSFRSASRRKRKC 71


>At1g51830.1 68414.m05843 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase GI:1321686 from [Arabidopsis thaliana]
          Length = 675

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +2

Query: 143 WLWPMAALNLQWDTATPLPEVTHEASALPLSAADTELCYWWSFWIPRWPFWRQ-HF 307
           W      LN+   T   LP+     +A PL+A  T L   W+   P  PF+   HF
Sbjct: 29  WTQVTTNLNVNISTIYELPQSVMSTAATPLNANAT-LNITWTIEPPTTPFYSYIHF 83


>At1g48605.1 68414.m05436 halotolerance protein (HAL3B) contains
           Pfam PF02441: Flavoprotein; identical to Halotolerance
           protein Hal3b (SP:P94063)[Arabidopsis thaliana]
          Length = 201

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 164 LNLQWDTATPLPEVTHEASALPLSAADTELCYWWSFW 274
           +N++ DT T  P +   AS    S   + LC+ +S W
Sbjct: 1   MNMEVDTVTRKPRILLAASGSVASIKFSNLCHCFSEW 37


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,947,618
Number of Sequences: 28952
Number of extensions: 136368
Number of successful extensions: 354
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)