Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1083
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    25   4.0  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    25   5.2  
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1...    25   5.2  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    25   6.9  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    24   9.1  

>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 320 HPSKQ*KKILMVRHLVSLHG*VPPLCL 400
           HPS+    IL  R ++S HG VPP  L
Sbjct: 100 HPSEACLYILNKRKVMSQHGLVPPAML 126


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 199 PHPSNRNALLLHGRNRQSGGTYP 131
           PHP N   +LL G N Q+  + P
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSP 119


>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 386

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 157 NRQSGGTYPCRLTRRLTISISDFFNRTKLIGIKTIR-QY 44
           N +  G   C L+ R   ++ D F++ + IG++T+R QY
Sbjct: 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQY 283


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 323 GGRAHSPPGVKWLLEPIDIHN 261
           GG  H P  V WLL P DI++
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = -1

Query: 189 QTETHYCFTAEIGRVVVPTRADSQDVLPSVFRIFLIERN**ASKRYVSIENITSIM 22
           QTE    FT ++   V PT   S +V  + F     E     S   V+  NITSI+
Sbjct: 19  QTEYTPGFTTDVATTVTPTPLPSANVTTTSFSSASTE----TSTHSVTSTNITSIV 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,833
Number of Sequences: 5004
Number of extensions: 44682
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)