Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1083
         (444 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0126 - 20378611-20379719,20380081-20381239                       31   0.31 
01_05_0127 - 18401461-18401464,18401868-18403876,18404060-184042...    29   1.7  
08_02_0669 + 19868149-19870179                                         28   2.9  
08_02_1416 - 26915306-26915459,26915553-26915668,26915798-269159...    28   3.9  
12_01_0708 - 6137865-6140909                                           27   5.1  
07_03_0023 + 12575213-12575800                                         27   5.1  
07_01_0864 - 7185070-7185141,7185274-7185402,7185585-7185695,718...    27   5.1  
08_01_0353 - 3107628-3107774,3108177-3108213,3108248-3109164,310...    27   9.0  

>11_06_0126 - 20378611-20379719,20380081-20381239
          Length = 755

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -1

Query: 441 FKPKNQPLLLYTRNRQSGGTYPCRLTRCLTISIFFYCLDGWTSSQPTW 298
           F  KN  +LL + NR +G T+P  L  C+ + I     + ++S  P W
Sbjct: 480 FSMKNIKVLLLSNNRFAG-TFPAFLEGCIQLQIIDLSRNNFSSKLPKW 526


>01_05_0127 -
           18401461-18401464,18401868-18403876,18404060-18404237,
           18404381-18404958,18405609-18405611
          Length = 923

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 402 NRQSGGTYPCRLTRCLTISIFFYCLDGW 319
           N+Q      C +TRCL +   F+C D W
Sbjct: 698 NKQFKNLRWCHVTRCLKMHTVFFCDDDW 725


>08_02_0669 + 19868149-19870179
          Length = 676

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -2

Query: 398 GRVVVPTRADSQDVLPSVFFFIA*MGGRAHSPPGVKWLLEPIDIHNVNRHPP 243
           G  VV     +  ++PS++  IA   G A      +WL+  I  H   R PP
Sbjct: 614 GDAVVALLGKTPGLMPSLYALIA--DGGAQGSKKARWLVNEIHRHYEQRQPP 663


>08_02_1416 -
           26915306-26915459,26915553-26915668,26915798-26915910,
           26915995-26916130,26916219-26916338,26916472-26916648,
           26916790-26916862,26916948-26917083,26917179-26918055,
           26918138-26918331,26918438-26918620,26918730-26918796,
           26918900-26919092,26919317-26919363,26919478-26919574,
           26919663-26919790,26919905-26920009,26920763-26920879
          Length = 1010

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 163 GRNRQSGGTYPCRLTRRLTISISDFFNRTKLIGIK 59
           G+ ++ GG   C++ R  +++I DFF       IK
Sbjct: 97  GKGKEDGGISLCQILRAFSLNIVDFFKEMPQFCIK 131


>12_01_0708 - 6137865-6140909
          Length = 1014

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 190 SNRNALLLHGRNRQSGGTYP-CRLTRRLTISISDFFNRTK 74
           SN   L+LHG N  S   +P  +L R  + SIS F N  K
Sbjct: 492 SNNKLLVLHGENSSSLVPFPKIKLLRLASCSISTFPNILK 531


>07_03_0023 + 12575213-12575800
          Length = 195

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
 Frame = +1

Query: 178 RFGLRGGAAVVTIHETLELVSQG----GWRFTL-WMSMGSSNHLTPGGL*ARPPI*AIKK 342
           R  L G   VV   E+ E   QG    GW + + WM M S   +   GL A+ P+ A   
Sbjct: 97  RQSLMGEVRVVK-EESGESCGQGLGRFGWVYDISWMGM-SRARIHVHGLTAQRPVLATSS 154

Query: 343 NTDGKTSC-ESARV 381
            TDG T   ES+R+
Sbjct: 155 RTDGTTRMGESSRL 168


>07_01_0864 -
           7185070-7185141,7185274-7185402,7185585-7185695,
           7186114-7186292,7186479-7186576,7186691-7186956,
           7187895-7188050,7188131-7188319,7188711-7188824,
           7189131-7189273,7189683-7189818,7189954-7190058
          Length = 565

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -3

Query: 226 RSHV*LQRLPHPSNRNALLLHGRNRQSGGTYPCRLTRRLTISISDFFNRTKLIGIKTIRQ 47
           RS + L R PHP++   L L       GG  P R+ RR+  S      + + +GI+   +
Sbjct: 13  RSPLVLHRHPHPAHHRRLRLLPLVAGGGGGSPPRVGRRIRAS----REKGRRVGIRVFAR 68

Query: 46  Y 44
           Y
Sbjct: 69  Y 69


>08_01_0353 -
           3107628-3107774,3108177-3108213,3108248-3109164,
           3109210-3110952
          Length = 947

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 413 FTPEIGRVVVPTRADSQDVLPSVFF 339
           F P+I R+V  TR D Q VL S  F
Sbjct: 452 FEPQITRIVQNTRPDRQTVLFSAIF 476


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,217,490
Number of Sequences: 37544
Number of extensions: 319641
Number of successful extensions: 606
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)