Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1083
         (444 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)               30   0.75 
SB_52116| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_41292| Best HMM Match : RRM_1 (HMM E-Value=0.0085)                  29   2.3  
SB_5456| Best HMM Match : Sushi (HMM E-Value=3.1e-15)                  28   3.0  
SB_21223| Best HMM Match : I-set (HMM E-Value=2.8e-11)                 28   4.0  
SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17)                 27   7.0  
SB_37338| Best HMM Match : FMO-like (HMM E-Value=2.1e-21)              27   7.0  

>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
          Length = 872

 Score = 30.3 bits (65), Expect = 0.75
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 235 QVLRSHV*LQRLPHPSNRNALLLHGRNRQSGGTY 134
           Q LR    +QR P P+ RN++ LHG   Q+   +
Sbjct: 22  QALRQQNQVQRRPEPTPRNSIFLHGLRAQTATNF 55


>SB_52116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1084

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 296 HQVGCELVHPSKQ*KKILMVRHLVSLHG*VPPLC 397
           HQ  C   HP KQ  + L+   L + HG   P+C
Sbjct: 845 HQFSCNEKHPVKQCNESLVKSCLDNYHGNATPIC 878


>SB_41292| Best HMM Match : RRM_1 (HMM E-Value=0.0085)
          Length = 292

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = -1

Query: 408 TRNRQSGGTYPCRLTRCLTISIFFYCLDGWTSSQPTWC*VVTGAHRHPQRKSPPT 244
           +R + SG   P  + +C+ ++ ++   +GW++S  +   V   A   PQ    P+
Sbjct: 115 SRKKPSGVPSPLYMAKCVELAHYYLGFNGWSTSVISITPVPVDATHSPQSNPAPS 169


>SB_5456| Best HMM Match : Sushi (HMM E-Value=3.1e-15)
          Length = 149

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 443 PSNQKTNHYCFTPEIGRVVVPTRADSQDVLPSVFFFIA 330
           PS  +  H+C TP + R     +A S D L  VF F A
Sbjct: 84  PSCAEPGHHCETPPLSRKRRSLQAHSSDGLDLVFLFDA 121


>SB_21223| Best HMM Match : I-set (HMM E-Value=2.8e-11)
          Length = 90

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 181 NALLLHGRNRQSGGTYPCRLT 119
           N+LL++G  R+  G+Y CR T
Sbjct: 54  NSLLINGVKREDAGSYQCRAT 74


>SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17)
          Length = 714

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -2

Query: 281 EPID-IHNVNRHPP*DTSSKVSCIVTTAAPPLKPKRITAS 165
           +P++ +  VN+H   +++S VS +V   + PLK + +T +
Sbjct: 436 KPLESLREVNKHVTENSTSPVSAVVEPPSQPLKREAVTVN 475


>SB_37338| Best HMM Match : FMO-like (HMM E-Value=2.1e-21)
          Length = 433

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 294 NTRWAVSSSTHLSNKKKY*W*DIL*VCTGRY 386
           N RW V+     SNKK     D + VCTG Y
Sbjct: 130 NPRWEVTIRNLNSNKKSTSTFDAVVVCTGHY 160


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,069,472
Number of Sequences: 59808
Number of extensions: 359878
Number of successful extensions: 846
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)