Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1083
         (444 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81588-1|CAB04716.1|  281|Caenorhabditis elegans Hypothetical pr...    30   0.87 
Z83128-3|CAB05637.1|  415|Caenorhabditis elegans Hypothetical pr...    27   4.6  
Z83128-2|CAB05636.1|  412|Caenorhabditis elegans Hypothetical pr...    27   4.6  
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass...    27   4.6  
AY305830-1|AAR11975.1|  418|Caenorhabditis elegans nuclear recep...    27   4.6  
AF273811-1|AAG15160.1|  415|Caenorhabditis elegans nuclear recep...    27   4.6  
AF273809-1|AAG15158.1|  418|Caenorhabditis elegans nuclear recep...    27   4.6  
AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.     27   4.6  
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.     27   4.6  
AF100670-1|AAN73858.1|  420|Caenorhabditis elegans Puf (pumilio/...    27   6.1  
U00064-5|AAN84796.1|  237|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U00064-4|AAN84795.1|  232|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z81588-1|CAB04716.1|  281|Caenorhabditis elegans Hypothetical
           protein T07D10.1 protein.
          Length = 281

 Score = 29.9 bits (64), Expect = 0.87
 Identities = 20/54 (37%), Positives = 24/54 (44%)
 Frame = -1

Query: 306 PTWC*VVTGAHRHPQRKSPPTLRYKF*GLMYSYNGCPTPQTETHYCFTAEIGRV 145
           PTWC  VTGA  H  + +PP            Y  CPT  +E HY +     RV
Sbjct: 113 PTWC-SVTGARFHEFQCTPPA----------PYCPCPTILSEFHYTYKMVSARV 155


>Z83128-3|CAB05637.1|  415|Caenorhabditis elegans Hypothetical
           protein W01D2.2b protein.
          Length = 415

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 375 CRLTRCLTISIFFYCLDGWTSSQPTW 298
           CRLTRCL + +    + G T   P W
Sbjct: 85  CRLTRCLDVGMNPRAVQGDTVEDPEW 110


>Z83128-2|CAB05636.1|  412|Caenorhabditis elegans Hypothetical
           protein W01D2.2a protein.
          Length = 412

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 375 CRLTRCLTISIFFYCLDGWTSSQPTW 298
           CRLTRCL + +    + G T   P W
Sbjct: 85  CRLTRCLDVGMNPRAVQGDTVEDPEW 110


>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 152, isoform a protein.
          Length = 2560

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 336 YCLDGWTSSQPTWC*VVTGAHRH-PQRKSPP 247
           YC+DGW  +    C V   A  H PQ +SPP
Sbjct: 431 YCMDGWRGND---CSVFADAIVHVPQAQSPP 458


>AY305830-1|AAR11975.1|  418|Caenorhabditis elegans nuclear receptor
           NHR-61 protein.
          Length = 418

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 375 CRLTRCLTISIFFYCLDGWTSSQPTW 298
           CRLTRCL + +    + G T   P W
Sbjct: 91  CRLTRCLDVGMNPRAVQGDTVEDPEW 116


>AF273811-1|AAG15160.1|  415|Caenorhabditis elegans nuclear receptor
           NHR-61 protein.
          Length = 415

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 375 CRLTRCLTISIFFYCLDGWTSSQPTW 298
           CRLTRCL + +    + G T   P W
Sbjct: 88  CRLTRCLDVGMNPRAVQGDTVEDPEW 113


>AF273809-1|AAG15158.1|  418|Caenorhabditis elegans nuclear receptor
           NHR-61 protein.
          Length = 418

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 375 CRLTRCLTISIFFYCLDGWTSSQPTW 298
           CRLTRCL + +    + G T   P W
Sbjct: 88  CRLTRCLDVGMNPRAVQGDTVEDPEW 113


>AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.
          Length = 2502

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 336 YCLDGWTSSQPTWC*VVTGAHRH-PQRKSPP 247
           YC+DGW  +    C V   A  H PQ +SPP
Sbjct: 373 YCMDGWRGND---CSVFADAIVHVPQAQSPP 400


>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
          Length = 2684

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 336 YCLDGWTSSQPTWC*VVTGAHRH-PQRKSPP 247
           YC+DGW  +    C V   A  H PQ +SPP
Sbjct: 555 YCMDGWRGND---CSVFADAIVHVPQAQSPP 582


>AF100670-1|AAN73858.1|  420|Caenorhabditis elegans Puf
           (pumilio/fbf) domain-containingprotein 4 protein.
          Length = 420

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 199 PHPSNRNALLLHGRNRQSGGTYPCRLTRRLTI 104
           P PS   A L++GRN +S  T   R+ +  TI
Sbjct: 7   PAPSATTANLINGRNHESPATSDARMFQTATI 38


>U00064-5|AAN84796.1|  237|Caenorhabditis elegans Hypothetical
           protein ZC155.5b protein.
          Length = 237

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 112 LTISISDFFNRTKLIGIKTIRQY*KYYIHNGWSLRI 5
           LT  +   FNR   IG   +RQ    Y+H G ++R+
Sbjct: 128 LTSPVYTSFNRAAAIGWMAVRQKNMKYMHVGCTIRL 163


>U00064-4|AAN84795.1|  232|Caenorhabditis elegans Hypothetical
           protein ZC155.5a protein.
          Length = 232

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 112 LTISISDFFNRTKLIGIKTIRQY*KYYIHNGWSLRI 5
           LT  +   FNR   IG   +RQ    Y+H G ++R+
Sbjct: 123 LTSPVYTSFNRAAAIGWMAVRQKNMKYMHVGCTIRL 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,799,222
Number of Sequences: 27780
Number of extensions: 259773
Number of successful extensions: 462
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)