Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1083
         (444 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   0.86 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   0.86 
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    22   2.6  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   4.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   6.1  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 0.86
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 208 QRLPHPSNRNALL-LHGRNRQSGGTYPCRLTR 116
           ++LP    ++ LL L+G NR+  G Y C + R
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRR 403


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 0.86
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 208 QRLPHPSNRNALL-LHGRNRQSGGTYPCRLTR 116
           ++LP    ++ LL L+G NR+  G Y C + R
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRR 403


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -3

Query: 418 TALHPK*AEWWYLPVQTHKMSYHQYFFLLLRWVDE 314
           T L P   + WY  +QTH     +    +L  + E
Sbjct: 30  TLLRPNFLDGWYQTLQTHMKKVREQMAGILSRIPE 64


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 375 CRLTRCLTISIFFYCL 328
           CRL +CLT+ +   C+
Sbjct: 39  CRLKKCLTVGMRPECM 54


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 375 CRLTRCLTISIFFYCL 328
           CRL +CLT+ +   C+
Sbjct: 242 CRLKKCLTVGMRPECV 257


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,294
Number of Sequences: 438
Number of extensions: 3418
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)