Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1083
         (444 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58050.1 68416.m06471 expressed protein                             29   1.9  
At2g40260.1 68415.m04952 myb family transcription factor contain...    27   7.5  
At1g01110.1 68414.m00014 expressed protein contains Prosite PS00...    27   7.5  
At3g53690.1 68416.m05929 zinc finger (C3HC4-type RING finger) fa...    26   10.0 

>At3g58050.1 68416.m06471 expressed protein
          Length = 1209

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 207 NGCPTPQTETHYC 169
           +GCP+P+ E HYC
Sbjct: 634 DGCPSPRAENHYC 646


>At2g40260.1 68415.m04952 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 410

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = -1

Query: 285 TGAHRHPQRKSPPTLRYKF*GLMYSYNGCPTPQT----ETHYCFTAEIGRVVVPTRADSQ 118
           +G+H H Q K       K  G +  YN   TP+     E H CF   + R+  P RA  +
Sbjct: 59  SGSHHHDQNK-------KNGGSVRPYNRSKTPRLRWTPELHICFLQAVERLGGPDRATPK 111

Query: 117 DVL 109
            VL
Sbjct: 112 LVL 114


>At1g01110.1 68414.m00014 expressed protein contains Prosite
           PS00165: Serine/threonine dehydratases
           pyridoxal-phosphate attachment site
          Length = 364

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 216 YSYNGCPTPQTETHYCFTAEIGRVVVPTRADSQDVLPS 103
           YSY    TP   ++Y FTA  G  +  T  ++  +LP+
Sbjct: 227 YSYTS-NTPSLRSNYSFTARSGCSISTTMVNNASLLPN 263


>At3g53690.1 68416.m05929 zinc finger (C3HC4-type RING finger)
           family protein contains a Zinc finger, C3HC4 type (RING
           finger) signature, PROSITE:PS00518 and a IBR domain,
           Pfam:PF01485
          Length = 320

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -1

Query: 225 GLMYSYNGCPTPQTE-THYCFTAE 157
           GL + YN C TP  + THYC+  +
Sbjct: 297 GLAFCYN-CGTPSRDHTHYCYNCK 319


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,144,130
Number of Sequences: 28952
Number of extensions: 246193
Number of successful extensions: 434
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)