Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1081
         (324 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    25   2.1  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    25   3.7  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   3.7  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    24   4.9  
SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb...    24   4.9  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    24   6.5  
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    24   6.5  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    24   6.5  

>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 73  SYIDHFFK*PILDLFLNLFFTSTHYILFYY 162
           S+   F+K P+ D+FL + F+    ILFY+
Sbjct: 261 SWFIKFWKIPVGDVFLAIPFSIVLTILFYF 290


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 83  IIFLNNRYWIYFLIFFLPVHIIFYFTI 163
           I+F    +W+Y L+F   V+++ +FT+
Sbjct: 209 ILFQGLGFWVYLLLF--AVNVLRFFTV 233


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 259 HQVSVRSSTRVSNKKKLNLYCDLNMSGRKYTKYSKIKYNV 140
           HQ +   ST+V   KKL++Y     + +    Y   +Y+V
Sbjct: 313 HQWAEELSTKVHPSKKLSVYIHHGSTKKNLDSYELSQYDV 352


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -3

Query: 277 APVTT*HQVSVRSSTRVSNKKKLNLYCDLNMSGRKYTKYSKIKYNVYW 134
           A + T +Q+  R S R +   K   +   + SGR +   +   +++YW
Sbjct: 134 ASLPTNYQLYQRDSNRENGNGKREFWLYGHPSGRPFRSVNDFLHHLYW 181


>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 436

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 77  ISIIFLNNRYWIYFLIFFLPVH 142
           ISI FLN  + ++  +FF  VH
Sbjct: 2   ISISFLNCFFLVFLFLFFSDVH 23


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 126 FFYQYTLYFILLYFVYLRP 182
           F    TL F+L+ FVY++P
Sbjct: 262 FLNPTTLLFLLISFVYIKP 280


>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 238 STRVSNKKKLNLYCDLNMSGRKYT-KY 161
           ST + N+KKLN   +L   G K+T KY
Sbjct: 71  STLLKNRKKLNSENELPNYGEKFTHKY 97


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 80  SIIFLNNRYWIYFLIFFLPVH 142
           ++IF  N+YW++ L F L ++
Sbjct: 447 NLIFPCNQYWVFNLEFLLGIY 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,408,244
Number of Sequences: 5004
Number of extensions: 27767
Number of successful extensions: 80
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)