Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1081
(324 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0963 + 26368959-26369462,26370900-26371205 29 1.1
09_04_0183 + 15389691-15390197,15391259-15391582 27 3.4
08_02_0580 - 18953208-18953513,18953668-18953868,18953929-189540... 27 3.4
03_05_1104 + 30431833-30432143,30432789-30432862,30432949-304330... 27 3.4
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 27 4.5
08_02_0520 - 18121561-18121821,18122216-18122470,18122560-181227... 26 5.9
12_02_0806 - 23336329-23336511,23336658-23336781,23336817-233368... 26 7.8
07_03_0390 + 17573653-17574089,17574250-17574280,17574397-17575134 26 7.8
05_01_0269 + 2062467-2062475,2063252-2063303,2063668-2063743,206... 26 7.8
02_04_0458 - 23102262-23102377,23102505-23102661,23103094-231041... 26 7.8
>06_03_0963 + 26368959-26369462,26370900-26371205
Length = 269
Score = 28.7 bits (61), Expect = 1.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 107 WIYFLIFFLPVHIIFYFTIFCVLTT 181
W+Y L FL + +F FT+F + T
Sbjct: 74 WLYLLALFLLILALFVFTVFAFVVT 98
>09_04_0183 + 15389691-15390197,15391259-15391582
Length = 276
Score = 27.1 bits (57), Expect = 3.4
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +2
Query: 92 LNNRYWIYFLIFFLPVHIIFYFTIFCVLTT 181
+N W Y + F+ + ++F FT+F + T
Sbjct: 70 VNCLLWFYLVAMFVLIVVLFCFTVFAFVVT 99
>08_02_0580 -
18953208-18953513,18953668-18953868,18953929-18954009,
18954096-18954410,18954493-18954636,18954733-18954822,
18954907-18954983,18955122-18955182,18955264-18955490,
18955581-18955740,18955825-18956025,18956114-18956209,
18956380-18956565,18956641-18956810,18957044-18957275,
18958652-18959029
Length = 974
Score = 27.1 bits (57), Expect = 3.4
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 89 FLNNRYWIYFLIFFL-PVHII-FYFTIFCVLTTAHI*ITIQVKFFFIAY 229
FL+N + I FL+FFL ++++ F F I +T A T+ F I +
Sbjct: 303 FLHNNFGILFLLFFLFQLNMLSFAFMISTFVTKAASATTVGFAIFIIGF 351
>03_05_1104 +
30431833-30432143,30432789-30432862,30432949-30433067,
30434462-30434526,30434962-30435310
Length = 305
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 251 HLVLSGYWSPQTSTTYMRHPP 313
HL L W+P T+ RHPP
Sbjct: 22 HLPLLNRWTPPTAAAAERHPP 42
>04_04_1630 - 34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 100 PILDLFLNLFFTSTHYILFYYILCTYDRSYL 192
P L L LFF + + FYY+L D+S +
Sbjct: 2146 PYRGLLLGLFFMTVQHRGFYYLLWNDDKSLI 2176
>08_02_0520 - 18121561-18121821,18122216-18122470,18122560-18122731,
18122824-18123105,18123159-18123292,18123425-18123508,
18123611-18123901,18123982-18124314,18124620-18124750,
18124826-18124930,18125011-18125167,18125248-18125351,
18125442-18125602,18125800-18126116,18126369-18126650,
18127011-18127312,18127609-18127699,18127771-18127824,
18128110-18128186,18128279-18128438,18128545-18128629,
18129059-18129367,18129514-18129890
Length = 1507
Score = 26.2 bits (55), Expect = 5.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 126 FFYQYTLYFILLYFVY 173
F+Y Y +YF LLYF +
Sbjct: 1369 FWYLYFMYFTLLYFTF 1384
>12_02_0806 -
23336329-23336511,23336658-23336781,23336817-23336879,
23336880-23336992,23337212-23337302,23337397-23337461,
23338279-23338323,23338500-23338692,23339381-23339544,
23339645-23339836
Length = 410
Score = 25.8 bits (54), Expect = 7.8
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = +1
Query: 142 HYILFYYILCTYDRSYLNHNTS*VFFYC 225
H ++ +++L Y ++NH+ + V F+C
Sbjct: 276 HAVVLFWLLLFYRFGFMNHHCAVVPFFC 303
>07_03_0390 + 17573653-17574089,17574250-17574280,17574397-17575134
Length = 401
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 86 IFLNNRYWIYFLIFFLP 136
I++ RYW + LIF LP
Sbjct: 376 IYVGERYWSFILIFGLP 392
>05_01_0269 +
2062467-2062475,2063252-2063303,2063668-2063743,
2064156-2064288,2064400-2064578,2065228-2065495,
2066250-2066342,2066667-2066776,2066887-2066905,
2066985-2067170
Length = 374
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -3
Query: 229 VSNKKKLNLYCDLNMSGRKYTKYSKIKYN 143
++NK+ +L+ L+M G+ + + K+KYN
Sbjct: 315 LTNKQPRSLHGLLSMDGQAFQQNEKVKYN 343
>02_04_0458 -
23102262-23102377,23102505-23102661,23103094-23104140,
23104357-23104500,23105389-23105457
Length = 510
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 187 YLNHNTS*VFFYCLHGWTISQTP 255
Y N N S LHGW + +TP
Sbjct: 137 YYNENVSMANLCKLHGWKVRETP 159
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,508,111
Number of Sequences: 37544
Number of extensions: 147852
Number of successful extensions: 334
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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