Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1081
         (324 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47160| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.50 
SB_19050| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.5  
SB_22524| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.0  
SB_2014| Best HMM Match : MAM (HMM E-Value=0)                          27   3.5  
SB_59380| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.1  
SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.1  
SB_47923| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.1  
SB_25691| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.1  
SB_9175| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.1  

>SB_47160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1806

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 221  IAYTGGRSHRHLVLSGYWSPQTS 289
            +A++G  SH  L+ +GYWS  TS
Sbjct: 1236 LAHSGDTSHARLMQTGYWSSDTS 1258


>SB_19050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +2

Query: 92  LNNRYWIYFLIFFLPVHII-FYFTIFCVLTTAHI*ITIQVKFF--FIAYTG 235
           L N   I FL+ +LP+H++ F +  FC  +   +   I V +F  F+ Y G
Sbjct: 220 LLNVVTIAFLLSWLPIHVLDFVYFFFCRTSYCAVYNIINVFYFAKFLQYAG 270


>SB_22524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 104 YWIYFLIFFLPVHIIFYFTI 163
           Y I+FLIFFL + I  Y+T+
Sbjct: 241 YIIFFLIFFLHISINIYYTL 260


>SB_2014| Best HMM Match : MAM (HMM E-Value=0)
          Length = 2282

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 221 IAYTGGRSHRHLVLSGYWSPQTSTTYMR-HP 310
           I Y  G S RH V+S    P   T Y+R HP
Sbjct: 822 IRYFDGNSDRHTVVSHRLLPSVQTRYIRIHP 852


>SB_59380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1226

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -3

Query: 250 SVRSSTRVSNKKKLNLYCDLNMSGRKYTKYSKIKYNVYW 134
           SV++STRV  ++ +N Y  LN++G      S  + N+ W
Sbjct: 451 SVQTSTRVLVRRSVNTYPPLNVTG---VGISSEEVNISW 486


>SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 211 VFFYCLHGWTISQTPGVKW 267
           V  YCL GW  S T  ++W
Sbjct: 428 VLIYCLCGWPASPTGALQW 446


>SB_47923| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +2

Query: 65  HEIHISIIFLNNRYWIYFLIFFLPVHIIFYFTIFCVLTTAHI 190
           H IH+     N  +W   LI     H+I YF  F  L  AHI
Sbjct: 228 HLIHLGSFNSNGGFWHTTLI---EKHLIDYFVPFLPLERAHI 266


>SB_25691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 388

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
 Frame = +1

Query: 142 HYILFYYILCTYDRSYLNHN---TS*VFFYCLHGWTISQTP----GVKWLLEPTNIHN 294
           +Y    ++L   +  Y  HN   T   ++YC H W +S+      G  WLL   N ++
Sbjct: 299 YYCGHNWLLTRENYYYCGHNWLLTRENYYYCGHNWLLSRENYYYCGHNWLLSRENYYS 356


>SB_9175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +2

Query: 131 LPVHIIFYFTIFCVLTTAHI*ITIQVKFFFIAYTGGRSHRHLVLSGYWSPQTSTTYMRHP 310
           LP   IFY        ++H+  T  + +     T   SH     + Y+  Q STTY  H 
Sbjct: 11  LPTAAIFYLQQPSPTYSSHLLPTAAIYYLQQPSTTYSSHLLPTAAIYYLQQPSTTYSSHL 70

Query: 311 P 313
           P
Sbjct: 71  P 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,127,576
Number of Sequences: 59808
Number of extensions: 190612
Number of successful extensions: 416
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 438034835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)