Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1081
(324 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23510-3|AAC46782.1| 340|Caenorhabditis elegans Hypothetical pr... 30 0.33
Z81030-13|CAB02705.2| 358|Caenorhabditis elegans Hypothetical p... 29 0.58
U28733-2|AAA68303.3| 381|Caenorhabditis elegans Hypothetical pr... 29 1.0
AL110479-1|CAB60310.2| 311|Caenorhabditis elegans Hypothetical ... 28 1.8
Z75552-6|CAA99939.1| 332|Caenorhabditis elegans Hypothetical pr... 27 2.3
AL132859-3|CAB60491.1| 346|Caenorhabditis elegans Hypothetical ... 27 3.1
AC024845-1|AAF60850.2| 347|Caenorhabditis elegans Hypothetical ... 27 3.1
AL031632-3|CAA21006.1| 283|Caenorhabditis elegans Hypothetical ... 27 4.1
Z78016-6|CAB01441.1| 336|Caenorhabditis elegans Hypothetical pr... 26 5.4
Z81475-4|CAB03911.1| 323|Caenorhabditis elegans Hypothetical pr... 26 7.2
Z81055-10|CAB02895.2| 169|Caenorhabditis elegans Hypothetical p... 26 7.2
Z70037-3|CAC42352.1| 902|Caenorhabditis elegans Hypothetical pr... 26 7.2
Z70037-2|CAA93879.2| 906|Caenorhabditis elegans Hypothetical pr... 26 7.2
U29097-3|AAM98030.1| 292|Caenorhabditis elegans Hypothetical pr... 26 7.2
D84668-1|BAA86913.1| 902|Caenorhabditis elegans CLH-1 protein. 26 7.2
AF173170-1|AAF13163.1| 868|Caenorhabditis elegans CLC chloride ... 26 7.2
Z81132-3|CAB03434.1| 365|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z78537-2|CAB01720.2| 604|Caenorhabditis elegans Hypothetical pr... 25 9.5
U39999-13|AAA81111.1| 320|Caenorhabditis elegans Hypothetical p... 25 9.5
AF039036-5|AAB94164.2| 351|Caenorhabditis elegans Hypothetical ... 25 9.5
>U23510-3|AAC46782.1| 340|Caenorhabditis elegans Hypothetical
protein R12C12.3 protein.
Length = 340
Score = 30.3 bits (65), Expect = 0.33
Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +2
Query: 101 RYWIYFLIFFLPVHIIF-YFTIFCVLTTAH 187
++W YF+ +F+ + +IF YF F ++T A+
Sbjct: 173 KHWWYFMFYFIILSVIFDYFLPFLIMTIAN 202
>Z81030-13|CAB02705.2| 358|Caenorhabditis elegans Hypothetical
protein C01G10.3 protein.
Length = 358
Score = 29.5 bits (63), Expect = 0.58
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 82 DHFFK*PILDLFLNLFFTSTHYILFYYI 165
D+FF+ +L + LF + YI FYY+
Sbjct: 184 DYFFEWSVLSIIFPLFINAVTYIRFYYL 211
>U28733-2|AAA68303.3| 381|Caenorhabditis elegans Hypothetical
protein C54A12.2 protein.
Length = 381
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/40 (27%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 95 NNRYWIYFLIFFLPVHIIF-YFTIFCVLTTAHI*ITIQVK 211
+ ++W YF+ +F+ + IIF Y F ++ A++ I +++
Sbjct: 246 SEKHWWYFMFYFIIISIIFDYLVPFVIMFVANMLIISELR 285
>AL110479-1|CAB60310.2| 311|Caenorhabditis elegans Hypothetical
protein Y105C5B.1 protein.
Length = 311
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 103 ILDLFLNLFFTSTHYILFYYILCTYDRSYLNHNTS*VF 216
+L+ F+ +FF Y+LF+ I R Y N + +F
Sbjct: 230 LLNQFIPVFFVQLIYVLFFVISMLISRMYTNSGINKLF 267
>Z75552-6|CAA99939.1| 332|Caenorhabditis elegans Hypothetical
protein W04D2.2a protein.
Length = 332
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 144 LYFILLYFVYLRPLIFKSQYKLSFF 218
LYFI YF++ PL+F S+Y F+
Sbjct: 156 LYFI--YFLFTAPLVFNSKYLAWFY 178
>AL132859-3|CAB60491.1| 346|Caenorhabditis elegans Hypothetical
protein Y39C12A.6 protein.
Length = 346
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +2
Query: 89 FLNNRYWIYFLIFFLPVHIIFYFTIFCVLTTAHI*ITIQVKFF 217
F N ++YFLI FL + I+ F++ ++ IT++VK++
Sbjct: 12 FNKNGCYVYFLIVFLIIIILNIFSLMYYF--FNLAITVRVKYY 52
>AC024845-1|AAF60850.2| 347|Caenorhabditis elegans Hypothetical
protein Y65B4BL.3 protein.
Length = 347
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 84 SFF*ITDIGFIS*SFFYQYTLYFILLYFVYLRPLIFKSQYKLS 212
+F+ + F+ FF ++F LY++ + P+I S Y +S
Sbjct: 221 NFYQPASLVFVDFGFFSPLVIHFATLYYIMIYPVIPLSIYTVS 263
>AL031632-3|CAA21006.1| 283|Caenorhabditis elegans Hypothetical
protein Y32B12B.3 protein.
Length = 283
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 110 IYFLIFFLPVHIIFYFTIFCVLTTAHI*ITIQVKFFFIAY 229
+YF IF+ H F +I +LT +I + V F + Y
Sbjct: 110 LYFPIFYFKYHRKFPISIIVILTLTYILVDQYVTFEYCNY 149
>Z78016-6|CAB01441.1| 336|Caenorhabditis elegans Hypothetical
protein R186.2a protein.
Length = 336
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +2
Query: 62 LHEIHISIIFLNNRYWIYFLIFFLPVHIIFYFTIFCVLTTAHI*ITIQVKFFFI 223
++ I ++I + + + F+IFF P H+ F F +LTT+ + + F+I
Sbjct: 23 VYPIFLTITLIFHSVLLVFIIFFSPSHL--NFLKFLLLTTSLLDVFATSILFYI 74
>Z81475-4|CAB03911.1| 323|Caenorhabditis elegans Hypothetical
protein C24H11.4 protein.
Length = 323
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 80 SIIFLNNRYWIYFLIFFLPVHIIFYFTIF 166
S+ N Y+I ++IF LP++ + F I+
Sbjct: 4 SVAMFVNYYYIAYVIFALPLNFLLIFLIW 32
>Z81055-10|CAB02895.2| 169|Caenorhabditis elegans Hypothetical
protein F01G10.4 protein.
Length = 169
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 62 LHEIHISIIFLNNRYW 109
LHEI+ IIFL YW
Sbjct: 104 LHEINSKIIFLTPEYW 119
>Z70037-3|CAC42352.1| 902|Caenorhabditis elegans Hypothetical
protein T27D12.2b protein.
Length = 902
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 131 LPVHIIFYFTIFCVLTTAHI*ITIQVKFFFIAYTGGR 241
L ++ +FYF I + T +I I V F I GGR
Sbjct: 476 LLIYFLFYFIIVPICITLYIPSGIFVPCFVIGACGGR 512
>Z70037-2|CAA93879.2| 906|Caenorhabditis elegans Hypothetical
protein T27D12.2a protein.
Length = 906
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 131 LPVHIIFYFTIFCVLTTAHI*ITIQVKFFFIAYTGGR 241
L ++ +FYF I + T +I I V F I GGR
Sbjct: 476 LLIYFLFYFIIVPICITLYIPSGIFVPCFVIGACGGR 512
>U29097-3|AAM98030.1| 292|Caenorhabditis elegans Hypothetical
protein F18C5.10 protein.
Length = 292
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 134 PVHIIFYFTIFCVLTTAHI 190
PV +I Y I C+LT A+I
Sbjct: 227 PVQVIEYLIILCILTGAYI 245
>D84668-1|BAA86913.1| 902|Caenorhabditis elegans CLH-1 protein.
Length = 902
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 131 LPVHIIFYFTIFCVLTTAHI*ITIQVKFFFIAYTGGR 241
L ++ +FYF I + T +I I V F I GGR
Sbjct: 476 LLIYFLFYFIIVPICITLYIPSGIFVPCFVIGACGGR 512
>AF173170-1|AAF13163.1| 868|Caenorhabditis elegans CLC chloride
channel protein protein.
Length = 868
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 131 LPVHIIFYFTIFCVLTTAHI*ITIQVKFFFIAYTGGR 241
L ++ +FYF I + T +I I V F I GGR
Sbjct: 438 LLIYFLFYFIIVPICITLYIPSGIFVPCFVIGACGGR 474
>Z81132-3|CAB03434.1| 365|Caenorhabditis elegans Hypothetical
protein T26E4.4 protein.
Length = 365
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 211 LNLYCDLNMSGRKYTKYSKIKYN 143
L LY N+SG+K K + I+YN
Sbjct: 16 LRLYLVENISGKKQKKLTMIRYN 38
>Z78537-2|CAB01720.2| 604|Caenorhabditis elegans Hypothetical
protein C09F12.2 protein.
Length = 604
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +2
Query: 83 IIFLNNRYWIYFLIFFLPVHIIFYFTIFCV 172
++ NN+ ++ + FL + I++FT+F V
Sbjct: 497 LVIPNNKCFMIIMFGFLGLQYIWFFTVFLV 526
>U39999-13|AAA81111.1| 320|Caenorhabditis elegans Hypothetical
protein F41G3.2 protein.
Length = 320
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 266 GYWSPQTSTTYMRHPP 313
GY PQT T ++RH P
Sbjct: 185 GYRQPQTETFFVRHQP 200
>AF039036-5|AAB94164.2| 351|Caenorhabditis elegans Hypothetical
protein E03D2.4 protein.
Length = 351
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = +3
Query: 105 IGFIS*SFFYQYTLYFILLYFVY----LRPLIFKSQYKLSFF 218
+GF+ ++ ++LY++Y +PL+F S+Y FF
Sbjct: 144 LGFLFRKKVFRVVFCLMVLYWIYSWAFTKPLLFTSEYSSWFF 185
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,758,592
Number of Sequences: 27780
Number of extensions: 154284
Number of successful extensions: 508
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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