Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1080
         (339 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...    40   1e-04
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    28   0.45 
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    27   0.78 
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    27   0.78 
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    26   1.8  
SPAC4C5.01 |||haloacid dehalogenase-like hydrolase |Schizosaccha...    25   3.2  
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    24   5.5  
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    24   5.5  
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    24   5.5  
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    24   5.5  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    24   7.3  
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce...    24   7.3  
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    24   7.3  
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    24   7.3  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    24   7.3  
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote...    23   9.6  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    23   9.6  

>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 39.9 bits (89), Expect = 1e-04
 Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +1

Query: 124 LSKT-LLDRYRDLPLPEDKVLATYIWIDGSGEHVRCKDRTLNYIPRLLKTCR 276
           LSK  +L++Y DLP    KV+A YIWIDG   H+R K  TL+  P  +   R
Sbjct: 10  LSKAAILNKYADLP-QNGKVMAEYIWIDGF-NHLRSKTMTLDAKPSSIDQLR 59


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 27.9 bits (59), Expect = 0.45
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 277 IGRSLGVWECSSKSCLCNEHAR 212
           I RSL +W+ +S SCLC  + +
Sbjct: 121 IDRSLQIWDITSLSCLCKFYTK 142


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 27.1 bits (57), Expect = 0.78
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -3

Query: 109 SSLAPDPIEFLECLALCFEFPTFF*HRLITFXCL 8
           S + P  ++++   +L  ++P FF H  +T  CL
Sbjct: 258 SGILPYFLQWMAVFSLYAKYPAFFEHHFLTIFCL 291


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 27.1 bits (57), Expect = 0.78
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 82  ILSGPVLKNSPNAFLSKTLLD 144
           ++  P +KN PN F+SK L+D
Sbjct: 447 VILDPHIKNDPNYFVSKELID 467


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +1

Query: 37  RKMSGTQNKVQDIPEILSGPVLKNSPNAF--LSKTLLDRYRDLPLPEDKVLATYIWI 201
           RK+S  + K+ D     +  +LKNS +    L K+L++  R L   ED++  T +WI
Sbjct: 439 RKISSREIKMLD-----ARSMLKNSFDGSRDLQKSLIEHVRTLRRIEDEITLTKMWI 490


>SPAC4C5.01 |||haloacid dehalogenase-like hydrolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 246

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 75  SRNSIGSGAKELSKCIPLEDTVGPVQRSTAAG 170
           SR   G  A   S+CI  ED++  V+ + AAG
Sbjct: 166 SRKQRGLKALTPSQCIAFEDSIPGVKSAKAAG 197


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 79  EILSGPVLKNSPNAFLSKTLLDRYRDLPLPEDKVLATYIWIDGSGE 216
           EILS  V          KTLL  ++D P+ +    A    + GSG+
Sbjct: 512 EILSAQVSALREEIVSLKTLLIAHKDCPVAKSNSAAVATSVIGSGD 557


>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 193 IWIDGSGEHVRCKDRTLNYIPRLLKTC 273
           + + GSG+   C    L+Y  R LK+C
Sbjct: 107 VGLQGSGKTTTCSKLALHYQRRGLKSC 133


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 97  VLKNSPNAFLSKTLLDRYRDLPLP 168
           V+KN P +    TLLD ++ L +P
Sbjct: 205 VVKNIPFSLEKDTLLDHFKQLGIP 228


>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -3

Query: 271 RSLGVWECSSKSCLCNEHARRSRRSICMWRGPCLPAAVDL 152
           R+L VW C + SC      RR   SI   RG  LP   D+
Sbjct: 76  RALYVWGCHNPSC------RRVPNSIVCVRGVRLPLKSDI 109


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +2

Query: 137 CWTGTEIYRCRKTRSSPHTYGSTAPASMF 223
           C+T  E ++C K  +  + Y +  P+  F
Sbjct: 822 CFTALEYFKCLKVLNLSYNYLTEIPSKFF 850


>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 243 ELHSQTPKDLPIWNY*RELYRPDDKH 320
           E HS  P+D P +N    L RP + H
Sbjct: 250 EHHSIPPEDTPYFNAGLMLIRPSELH 275


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +3

Query: 72  HSRNSIGSGAKELSKCIPLEDTV-GPVQRSTAAGRQ 176
           H R  + SG   + +C+ + +T+ G +Q     G Q
Sbjct: 302 HQRGILASGGGTIDRCLTIHNTLTGRLQNKLDTGSQ 337


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +2

Query: 146 GTEIYRCRKTRSSPHTYGSTAPA-SMFVAKT 235
           G+E Y C +    PH  GS  P  S F+  T
Sbjct: 251 GSERYECPECLFQPHLVGSEQPGLSEFIFDT 281


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 332 VSEFVLVVWPVELPSVIPY 276
           +S  +L  WP E PS++ Y
Sbjct: 902 LSALILAPWPSETPSLLAY 920


>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 262 GVWECSSKSC 233
           G+W+CS K C
Sbjct: 53  GIWKCSGKGC 62


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 72  HSRNSIGSGAKELSKCIPLEDTVGPVQRSTAAGRQ 176
           HSR      A+ +      E+T+G + RS AA R+
Sbjct: 765 HSRKETAKTARFIRDKALEEETIGHLLRSDAASRE 799


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,376,824
Number of Sequences: 5004
Number of extensions: 27495
Number of successful extensions: 84
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)