Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1080
(339 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0661 - 30693701-30693853,30694037-30694196,30694290-306943... 35 0.019
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 34 0.025
03_02_0210 - 6425708-6425863,6425955-6426114,6426204-6426295,642... 34 0.033
04_02_0018 - 8595479-8595678,8595782-8595935,8596396-8597032,859... 29 0.70
10_01_0097 - 1171949-1172047,1172520-1172591,1172791-1172949,117... 28 1.6
05_01_0054 + 379974-380215,380343-380556,381603-381892,382384-38... 28 2.1
10_08_0249 + 16172811-16172987,16174048-16174299,16174426-161745... 27 2.8
11_01_0136 + 1135170-1135406,1135854-1136240 27 5.0
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043... 27 5.0
01_01_0210 - 1801335-1802138 27 5.0
01_06_0474 + 29604201-29604527,29604634-29604988,29605071-296054... 26 6.6
07_03_1509 - 27246721-27247350 26 8.7
07_01_1186 + 11266210-11266517,11266608-11266656 26 8.7
01_01_0779 - 6030245-6031780 26 8.7
>02_05_0661 -
30693701-30693853,30694037-30694196,30694290-30694381,
30694469-30694543,30694671-30694799,30694916-30695003,
30695118-30695224,30695645-30695693,30695802-30695905,
30696108-30696147,30696838-30696911
Length = 356
Score = 34.7 bits (76), Expect = 0.019
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +1
Query: 172 DKVLATYIWIDGSGEHVRCKDRTLN 246
+K++A YIWI GSG +R K RTL+
Sbjct: 17 EKIIAEYIWIGGSGMDLRSKARTLS 41
>04_04_1445 -
33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 34.3 bits (75), Expect = 0.025
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +1
Query: 172 DKVLATYIWIDGSGEHVRCKDRTLN 246
DK++A YIW+ G+G +R K RT++
Sbjct: 816 DKIIAEYIWVGGTGIDLRSKSRTIS 840
>03_02_0210 -
6425708-6425863,6425955-6426114,6426204-6426295,
6426490-6426564,6426701-6426829,6427312-6427375,
6427761-6427867,6428795-6428843,6428955-6429058,
6429166-6429205,6429492-6429565
Length = 349
Score = 33.9 bits (74), Expect = 0.033
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +1
Query: 172 DKVLATYIWIDGSGEHVRCKDRTL 243
DK++A YIW+ GSG +R K RT+
Sbjct: 17 DKIIAEYIWVGGSGIDLRSKARTV 40
>04_02_0018 -
8595479-8595678,8595782-8595935,8596396-8597032,
8597126-8597217
Length = 360
Score = 29.5 bits (63), Expect = 0.70
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 283 FHIGRSLGVWECSSKSCLCNEHARRSRRSIC 191
F +G +GV C + SCL EH RRS + C
Sbjct: 86 FKVGDRVGVG-CIAASCLDCEHCRRSEENYC 115
>10_01_0097 -
1171949-1172047,1172520-1172591,1172791-1172949,
1172998-1173381,1173478-1175253,1175329-1175452,
1176859-1177027,1177131-1177226,1177339-1177527,
1177965-1179303
Length = 1468
Score = 28.3 bits (60), Expect = 1.6
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +3
Query: 6 YKQXKVIKRC*KNVGNSKQSARHSRNSIGSGAKELSKCIPLEDTVGPVQRSTAAGRQGP 182
+K+ +V G++ QS+R +R ++GS S+C L VG V+R T + P
Sbjct: 526 FKEGEVAVLSFPRPGSASQSSRSNRRNVGSNEDTESECGRL---VGTVRRHTPIDTRDP 581
>05_01_0054 +
379974-380215,380343-380556,381603-381892,382384-382560,
382705-383481,383572-383645,383757-383819,383919-384007,
384106-384201,384319-384978,385613-385687,386422-386492,
386578-386635,386900-387104,387379-387869
Length = 1193
Score = 27.9 bits (59), Expect = 2.1
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +3
Query: 9 KQXKVIKRC*KNVGNSKQSARHSRNSIGSGAKELSKCIPLEDTV--GPVQRSTAAGRQGP 182
K+ KV ++ N ++A RNS GS IPL++ + G V+R +GR G
Sbjct: 472 KERKVKEKATNNGEVENEAANLVRNSAGSIVSSNKNTIPLKEELQDGGVRRQGRSGR-GT 530
Query: 183 RHI 191
H+
Sbjct: 531 MHV 533
>10_08_0249 +
16172811-16172987,16174048-16174299,16174426-16174505,
16174616-16174701,16174799-16174904,16174987-16175143,
16175220-16175315,16175797-16175845,16175946-16176205,
16176327-16176499,16176692-16176812,16176923-16176975,
16177088-16177217,16177371-16177516,16177887-16178075,
16178317-16178549,16178784-16178932,16179042-16179104
Length = 839
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 157 LPLPEDKVL-ATYIWIDGSGEHVRCK 231
+PL E VL +WID SG+H RC+
Sbjct: 397 IPLSEQDVLFVRVVWIDTSGQH-RCR 421
>11_01_0136 + 1135170-1135406,1135854-1136240
Length = 207
Score = 26.6 bits (56), Expect = 5.0
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 84 SIGSGAK--ELSKCIPLEDTVGPVQRSTAAGRQGPRHIHMDRRLRRACS 224
SI S A+ + +K IP+ + P + GR+ R + M L+R CS
Sbjct: 81 SIASSARVHQFTKSIPIPNKATPSEEEELKGREEDRCVAMTNELKR-CS 128
>10_07_0063 -
12502305-12503361,12503567-12503668,12504251-12504378,
12504653-12504764,12504876-12504927,12505260-12505517,
12505943-12506079,12506296-12506606
Length = 718
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 144 PVQRSTAAGRQGPRHIHMDRRLRRACSLQRQ 236
P+Q+S+A +Q P+H H ++ L R Q Q
Sbjct: 461 PIQQSSAYPQQYPKHQHHNQALPRVPPSQEQ 491
>01_01_0210 - 1801335-1802138
Length = 267
Score = 26.6 bits (56), Expect = 5.0
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = -3
Query: 220 HARR----SRRSICMWRGPCLPAAVDLCTGPTVSSRGMHLESSLAP 95
H RR S S+ + GP + A + T P + G+ L+ SLAP
Sbjct: 219 HGRRIHASSAASLARYPGPAMVVAEPVATVPEDTCLGLDLQLSLAP 264
>01_06_0474 +
29604201-29604527,29604634-29604988,29605071-29605411,
29606502-29606940,29607558-29607913
Length = 605
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Frame = -3
Query: 211 RSRRSICMWRGP---CLPAAVDLCTGPTVSS 128
RS RS C W GP C +VD GP V S
Sbjct: 573 RSLRSTCGWAGPVGSCTAGSVDF-DGPRVGS 602
>07_03_1509 - 27246721-27247350
Length = 209
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 94 PVLKNSPNAFLSKTLLDRYRDLPLPEDKVLATYI 195
PVL + P+A L YR PLP V+++++
Sbjct: 31 PVLGSLPSAIKCNPLAPFYRFSPLPRSPVVSSHL 64
>07_01_1186 + 11266210-11266517,11266608-11266656
Length = 118
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = +3
Query: 69 RHSRNSIGSGAKELSKCIPLEDTVGPVQRSTAAGRQGPRHIHMDRRLRRACSLQ 230
R SR +G+G ++C + V+R A R+G R+ + C Q
Sbjct: 15 RSSRQGVGAGLGRAARCAAAQRRGRAVRRRGAEARRGGGRPGRGRQAQAQCRAQ 68
>01_01_0779 - 6030245-6031780
Length = 511
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 66 ARHSRNS-IGSGAKELSKCIPLEDTVGPVQRSTAAGRQGPRH 188
AR SR +G G E +++TV + +TAAG P H
Sbjct: 261 ARQSRQRMLGGGEPECLLDYLMQETVREIDEATAAGLPPPPH 302
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,304,887
Number of Sequences: 37544
Number of extensions: 200267
Number of successful extensions: 631
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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