Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1080
(339 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50671| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 3e-06
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.9
SB_39864| Best HMM Match : Ras (HMM E-Value=1.6e-30) 27 2.9
SB_25953| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_4165| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_19532| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.8
SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.8
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22) 26 9.0
SB_19059| Best HMM Match : Arm (HMM E-Value=0.044) 26 9.0
SB_9409| Best HMM Match : HLH (HMM E-Value=5.8e-17) 26 9.0
SB_2092| Best HMM Match : RVT_1 (HMM E-Value=0.00047) 26 9.0
>SB_50671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 403
Score = 47.6 bits (108), Expect = 3e-06
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +1
Query: 136 LLDRYRDLPLPEDKVLATYIWIDGSGEHVRCKDRTLNYIPR 258
+L++Y+ L D+V A YIW+DGSGE +RCK RTL+ P+
Sbjct: 14 VLEKYQRLD-QGDRVQALYIWVDGSGEGIRCKSRTLDKPPK 53
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 21 VIKRC*KNVGNSKQSARHSRNSIGSGAKELSKCIPLEDTVGPVQRS 158
V ++C N GNS+Q +SR G+ K +E T G ++++
Sbjct: 188 VAQKCHGNRGNSRQDRANSRQDRGNSLKIEQSRGKIEQTHGKIEQN 233
>SB_39864| Best HMM Match : Ras (HMM E-Value=1.6e-30)
Length = 421
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 149 TEIYRCRKTRSSPHTYGSTAPASMFVAKT 235
T + C R P TY S+ P MFV +T
Sbjct: 219 TVLVACVDCRIMPETYMSSEPGDMFVVRT 247
>SB_25953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 160 PLPEDKVLATYIWIDGSGEHVR 225
P P+D ++A Y +DGS ++VR
Sbjct: 307 PPPKDDLIAAYYKLDGSDDNVR 328
>SB_4165| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 94 PVLKNSPNAFLSKTLLDRYRDLPLP 168
PV+KN P+ F SK ++ +L LP
Sbjct: 33 PVIKNKPSPFSSKPVMFEAEELVLP 57
>SB_19532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 26.2 bits (55), Expect = 6.8
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = -3
Query: 211 RSRRSICMWRGPCLPAAVDLCTGPTVSSRGMHL 113
R R C WR P LCT +V + HL
Sbjct: 93 RGLREFCQWRYRSAPILAFLCTRASVMAPPRHL 125
>SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1571
Score = 26.2 bits (55), Expect = 6.8
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = -3
Query: 211 RSRRSICMWRGPCLPAAVDLCTGPTVSSRGMHL 113
R R C WR P LCT +V + HL
Sbjct: 1292 RGLREFCQWRYRSAPILAFLCTRASVMAPPRHL 1324
>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
Length = 2269
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 116 MHSSRRHCWTGTEIYRCRKT 175
+H+ RRHC + IY RKT
Sbjct: 1549 LHTRRRHCGYKSLIYESRKT 1568
>SB_19059| Best HMM Match : Arm (HMM E-Value=0.044)
Length = 603
Score = 25.8 bits (54), Expect = 9.0
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +1
Query: 25 LSGARKMSGTQNKVQDIPEILSGPVLKNSPNAFLSKTLLDRYRDLPLPEDKV 180
++GAR+M N VQ + +I+ P ++ + +L DLPLPED +
Sbjct: 374 VNGAREMYIDHNFVQLLTQIME-PFSQDEDLVYNISRILSLL-DLPLPEDMI 423
>SB_9409| Best HMM Match : HLH (HMM E-Value=5.8e-17)
Length = 362
Score = 25.8 bits (54), Expect = 9.0
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Frame = -3
Query: 193 CMWRGPCLPAAVDLCTGPTVSSRGMHLESSLAPDPIEFL--ECLALCFEFP 47
CMW G DL T S ++ P P+E++ +C+ FP
Sbjct: 108 CMWNGSAYETFTDLRQLVTHPSEDLYETPCSTPPPVEYISSDCVDPSTVFP 158
>SB_2092| Best HMM Match : RVT_1 (HMM E-Value=0.00047)
Length = 712
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +2
Query: 89 RVRC*RTLQMHSSRRHCWTGTEIYRCRKTRSSPHTY 196
R R RT +S HC + +RC +T + H +
Sbjct: 553 RHRVVRTASFLTSHMHCTFSPKCHRCGRTETLKHVF 588
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,652,750
Number of Sequences: 59808
Number of extensions: 230592
Number of successful extensions: 622
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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