Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1080
         (339 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82259-3|CAB05127.1|  368|Caenorhabditis elegans Hypothetical pr...    53   6e-08
Z80223-3|CAB02317.1|  369|Caenorhabditis elegans Hypothetical pr...    50   6e-07
Z29560-1|CAA82655.1|  367|Caenorhabditis elegans Hypothetical pr...    46   9e-06
AL110479-26|CAB54376.1|  385|Caenorhabditis elegans Hypothetical...    39   8e-04
AL110479-25|CAB60321.1|  388|Caenorhabditis elegans Hypothetical...    39   8e-04
AC006618-2|AAK68249.1|  340|Caenorhabditis elegans Glutamine syn...    29   1.1  
AC092690-1|AAK73856.2|  427|Caenorhabditis elegans Hypothetical ...    28   1.5  
Z49911-6|CAA90132.1|  831|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z34533-5|CAA84298.1|  781|Caenorhabditis elegans Hypothetical pr...    27   3.4  
U27312-4|AAA68248.1|  405|Caenorhabditis elegans Hypothetical pr...    27   4.5  
U58757-2|AAC47915.2|  402|Caenorhabditis elegans Hypothetical pr...    26   6.0  
U42839-6|ABD63236.1|   88|Caenorhabditis elegans Hypothetical pr...    26   6.0  
U42839-5|AAM54196.1|  133|Caenorhabditis elegans Hypothetical pr...    26   6.0  
AC024824-2|AAK85502.1|  740|Caenorhabditis elegans Hypothetical ...    26   6.0  
AL032627-12|CAB63357.1|  577|Caenorhabditis elegans Hypothetical...    26   7.9  
AL031628-1|CAA20973.1|  416|Caenorhabditis elegans Hypothetical ...    26   7.9  
AC025723-12|AAK29938.1|  215|Caenorhabditis elegans Hypothetical...    26   7.9  
AC024824-4|AAY55895.1|  127|Caenorhabditis elegans Hypothetical ...    26   7.9  

>Z82259-3|CAB05127.1|  368|Caenorhabditis elegans Hypothetical
           protein C28D4.3 protein.
          Length = 368

 Score = 52.8 bits (121), Expect = 6e-08
 Identities = 22/47 (46%), Positives = 30/47 (63%)
 Frame = +1

Query: 124 LSKTLLDRYRDLPLPEDKVLATYIWIDGSGEHVRCKDRTLNYIPRLL 264
           L +  +D +  LP    K  ATY+WIDG+GEH+R K RT+N  P+ L
Sbjct: 12  LGQATIDHFMGLPAHPTKCQATYVWIDGTGEHLRAKTRTINTKPQYL 58


>Z80223-3|CAB02317.1|  369|Caenorhabditis elegans Hypothetical
           protein F26D10.10 protein.
          Length = 369

 Score = 49.6 bits (113), Expect = 6e-07
 Identities = 21/47 (44%), Positives = 28/47 (59%)
 Frame = +1

Query: 124 LSKTLLDRYRDLPLPEDKVLATYIWIDGSGEHVRCKDRTLNYIPRLL 264
           L +  +D +  LP    K  ATY+WIDG+GE +R K RT N  P+ L
Sbjct: 12  LGQATIDHFMGLPAHPSKCQATYVWIDGTGEQLRAKTRTFNLKPQYL 58


>Z29560-1|CAA82655.1|  367|Caenorhabditis elegans Hypothetical
           protein K03H1.1 protein.
          Length = 367

 Score = 45.6 bits (103), Expect = 9e-06
 Identities = 18/48 (37%), Positives = 32/48 (66%)
 Frame = +1

Query: 124 LSKTLLDRYRDLPLPEDKVLATYIWIDGSGEHVRCKDRTLNYIPRLLK 267
           L   ++D++  L     K+ ATY+WIDG+GE++R K RT + +P+ ++
Sbjct: 12  LGTAVIDQFLGLRPHPTKIQATYVWIDGTGENLRSKTRTFDKLPKRIE 59


>AL110479-26|CAB54376.1|  385|Caenorhabditis elegans Hypothetical
           protein Y105C5B.28b protein.
          Length = 385

 Score = 39.1 bits (87), Expect = 8e-04
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = +1

Query: 184 ATYIWIDGSGEHVRCKDRTLNYIP 255
           A YIWIDGSGE++R K RT ++ P
Sbjct: 30  ALYIWIDGSGENIRAKTRTFDFEP 53


>AL110479-25|CAB60321.1|  388|Caenorhabditis elegans Hypothetical
           protein Y105C5B.28a protein.
          Length = 388

 Score = 39.1 bits (87), Expect = 8e-04
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = +1

Query: 184 ATYIWIDGSGEHVRCKDRTLNYIP 255
           A YIWIDGSGE++R K RT ++ P
Sbjct: 33  ALYIWIDGSGENIRAKTRTFDFEP 56


>AC006618-2|AAK68249.1|  340|Caenorhabditis elegans Glutamine
           synthetase (glutamate-ammonia ligase) protein 1 protein.
          Length = 340

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 240 FELHSQTPKDLPIWNY 287
           F+   +TP DLPIWN+
Sbjct: 52  FDFEPKTPSDLPIWNF 67


>AC092690-1|AAK73856.2|  427|Caenorhabditis elegans Hypothetical
           protein BE0003N10.2 protein.
          Length = 427

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 199 SICMWRGPCLPAAVDLCTGPTVSSRGMHLE 110
           ++CM  G  LP  V LC G  V SRG+ +E
Sbjct: 238 TLCMAHGADLPPIVPLCIG-EVESRGLDVE 266


>Z49911-6|CAA90132.1|  831|Caenorhabditis elegans Hypothetical
           protein M28.8 protein.
          Length = 831

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +1

Query: 28  SGARKMSGTQNKVQDIPEILSGPVLKNSPN 117
           SG RK+ G +++V+   E+ + P+L ++ N
Sbjct: 716 SGTRKLGGKKDQVRPTEELWATPILSSTSN 745


>Z34533-5|CAA84298.1|  781|Caenorhabditis elegans Hypothetical
           protein B0285.7 protein.
          Length = 781

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = -3

Query: 220 HARRSRRSICMWRGPCLPAAVDLCTGPTVSSRGMHLESSLAPDPIEFLECLALCFEFPTF 41
           H ++S  ++C+  GP + A  +    P VS+ G+       P   + L  +A     P F
Sbjct: 314 HNQKSTFNLCLNHGPSMSAIANSLINPNVSTSGISCFEKTVPLIAQQLSFVAFEKTNPLF 373

Query: 40  F 38
           +
Sbjct: 374 Y 374


>U27312-4|AAA68248.1|  405|Caenorhabditis elegans Hypothetical
           protein F26A1.8 protein.
          Length = 405

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = -3

Query: 196 ICMWRGPCLPAAVDLCTGPTVSSRGMHLESSLAPDPIEFLECLAL 62
           I  WR   +   V   TGP  S  G HL   +    +  LE +AL
Sbjct: 302 IMAWRYFAVSIPVSAATGPIGSFLGSHLHRQVVAGFVYVLEAIAL 346


>U58757-2|AAC47915.2|  402|Caenorhabditis elegans Hypothetical
           protein C01B10.3 protein.
          Length = 402

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 192 HMDRRLRRACSLQRQDFELHS 254
           H+DR  RR  +++R  F+LHS
Sbjct: 271 HVDRHGRRTTTVERTRFDLHS 291


>U42839-6|ABD63236.1|   88|Caenorhabditis elegans Hypothetical
           protein F11C7.6b protein.
          Length = 88

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 140 WTGTEIYRCRKTRSSPHTYGST 205
           W G   Y   KT+ S H  GST
Sbjct: 61  WNGKRFYCSNKTKESSHVEGST 82


>U42839-5|AAM54196.1|  133|Caenorhabditis elegans Hypothetical
           protein F11C7.6a protein.
          Length = 133

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 140 WTGTEIYRCRKTRSSPHTYGST 205
           W G   Y   KT+ S H  GST
Sbjct: 106 WNGKRFYCSNKTKESSHVEGST 127


>AC024824-2|AAK85502.1|  740|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.2 protein.
          Length = 740

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -3

Query: 205 RRSICMWRGPCLPAAVDLCTGPTVSSRGMHLESSLAPDPIEFLECLALCFEFPT 44
           RRS+C W GP       +      S  G+ + S + P P  F+   A   E P+
Sbjct: 15  RRSLCEWLGPFEEFHDRVAKNQQTSRHGL-IRSKMKPRPSPFVTLQAPPHESPS 67


>AL032627-12|CAB63357.1|  577|Caenorhabditis elegans Hypothetical
           protein Y41C4A.9 protein.
          Length = 577

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 127 SKTLLDRYRDLPLPEDKVLATYIWIDGSGEHVR 225
           S ++    RDL LP+ + L+ + W +G  EH++
Sbjct: 60  SSSIYKGTRDLQLPKSEDLSNFGWNEGVLEHLQ 92


>AL031628-1|CAA20973.1|  416|Caenorhabditis elegans Hypothetical
           protein Y102A5D.1 protein.
          Length = 416

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 73  IPEILSGPVLKNSPNAFLSKTLLDRYRDLP 162
           IPE L   V++ S NAF +    D+Y D+P
Sbjct: 361 IPE-LCATVMEQSKNAFWNHIFGDKYTDVP 389


>AC025723-12|AAK29938.1|  215|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.1 protein.
          Length = 215

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -3

Query: 274 GRSLGVWECSSKSCLCNEHARRSRRSICM 188
           GR  GVW C   SC      R++    C+
Sbjct: 49  GRHYGVWACDGCSCFFKRSVRKNIIYTCI 77


>AC024824-4|AAY55895.1|  127|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.5 protein.
          Length = 127

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 78  RNSIGSGAKELSKCIPLEDTVGPVQRSTAA 167
           RNS  +G+ +  +  P+E T G  QRST++
Sbjct: 49  RNSSSNGSSDRFELEPVEPTEGGPQRSTSS 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,798,099
Number of Sequences: 27780
Number of extensions: 165239
Number of successful extensions: 488
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)