Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1080
         (339 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    25   0.19 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   0.43 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   1.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   2.3  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   3.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   3.1  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   4.1  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   4.1  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 25.4 bits (53), Expect = 0.19
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 235 CLCNEHARRSRRSICMWRGPCLP 167
           C+C     R+++ +C+ R  CLP
Sbjct: 71  CVCRLGYLRNKKKVCVPRSKCLP 93


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.2 bits (50), Expect = 0.43
 Identities = 19/90 (21%), Positives = 31/90 (34%)
 Frame = +3

Query: 33  C*KNVGNSKQSARHSRNSIGSGAKELSKCIPLEDTVGPVQRSTAAGRQGPRHIHMDRRLR 212
           C +  G+ K    H +    S      +  P+E  +   Q S + G     H   +    
Sbjct: 265 CHETFGSKKTMELHIKTHSDSSVVGSPRDSPIEPEIEISQNSVSTGSDKENHKTEE---- 320

Query: 213 RACSLQRQDFELHSQTPKDLPIWNY*RELY 302
                   +   +  TP+D P + Y RE Y
Sbjct: 321 -----PNDEVATYDNTPRDFPYYMYSREQY 345


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +3

Query: 90  GSGAKELSKCIPLEDTVGPVQRSTAAGRQGPRHIHMDRRLRRACSLQRQDFELHS 254
           GSG+   S   P +  V  V+ ST++G     ++ +  RL    SLQ      HS
Sbjct: 237 GSGSLPAS---PADSGVSDVESSTSSGGNEDANLLLKARLNPNSSLQPSLASHHS 288


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +3

Query: 183 RHIHMDRRLRRACSLQRQDFELHSQTPKD 269
           R +H+  R    CS+ R D  L     KD
Sbjct: 620 RDLHLGERTTLTCSVTRGDLPLSISWLKD 648


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 6/24 (25%), Positives = 14/24 (58%)
 Frame = +1

Query: 214 EHVRCKDRTLNYIPRLLKTCRYGI 285
           E + C++ T  +   ++ +C +GI
Sbjct: 170 EPIECRELTARFTTDVIGSCAFGI 193


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 112 ESSLAPDPIEFLECLA 65
           E +L P P  FL+C+A
Sbjct: 402 EETLQPGPSMFLKCVA 417


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = -3

Query: 235 CLCNEHARRSRRSICMWRGPC 173
           C+C     R+++ +C+ R  C
Sbjct: 71  CVCRLGYLRNKKKVCVPRSKC 91


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 323 FVLVVWPVELPSVIPY 276
           F+L  W + L S IP+
Sbjct: 161 FILAAWLIALISAIPF 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,587
Number of Sequences: 438
Number of extensions: 1984
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)