Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1080
(339 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g37600.1 68418.m04529 glutamine synthetase, putative similar ... 36 0.009
At3g63520.1 68416.m07155 9-cis-epoxycarotenoid dioxygenase / neo... 36 0.009
At5g16570.1 68418.m01939 glutamine synthetase, putative similar ... 35 0.012
At5g35630.1 68418.m04253 glutamine synthetase (GS2) identical to... 34 0.021
At3g17820.1 68416.m02272 glutamine synthetase (GS1) identical to... 34 0.021
At1g66200.1 68414.m07514 glutamine synthetase, putative similar ... 34 0.021
At1g48470.1 68414.m05418 glutamine synthetase, putative similar ... 34 0.021
At3g62900.1 68416.m07066 expressed protein ; expression supporte... 27 2.4
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ... 27 4.2
At1g61600.1 68414.m06941 expressed protein 27 4.2
At1g07420.2 68414.m00792 sterol 4-alpha-methyl-oxidase 2 (SMO2) ... 26 5.6
At1g07420.1 68414.m00791 sterol 4-alpha-methyl-oxidase 2 (SMO2) ... 26 5.6
At3g43600.1 68416.m04639 aldehyde oxidase, putative identical to... 26 7.4
At1g35680.1 68414.m04436 50S ribosomal protein L21, chloroplast ... 26 7.4
At2g28390.1 68415.m03450 SAND family protein similar to Sand (GI... 25 9.7
At2g17370.1 68415.m02006 3-hydroxy-3-methylglutaryl-CoA reductas... 25 9.7
At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains... 25 9.7
At1g61550.1 68414.m06934 S-locus protein kinase, putative simila... 25 9.7
>At5g37600.1 68418.m04529 glutamine synthetase, putative similar to
glutamine synthetase, cytosolic isozyme (Glutamate--
ammonia ligase, GS1) [Lotus japonicus] SWISS-PROT:Q42899
Length = 356
Score = 35.5 bits (78), Expect = 0.009
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1
Query: 172 DKVLATYIWIDGSGEHVRCKDRTL 243
DK++A YIW+ GSG +R K RTL
Sbjct: 17 DKIIAEYIWVGGSGMDMRSKARTL 40
>At3g63520.1 68416.m07155 9-cis-epoxycarotenoid dioxygenase /
neoxanthin cleavage enzyme / NCED1 / carotenoid cleavage
dioxygenase 1 (CCD1) identical to putative
9-cis-epoxy-carotenoid dioxygenase [GI:3096910];
contains Pfam profile PF03055: Retinal pigment
epithelial membrane protein
Length = 538
Score = 35.5 bits (78), Expect = 0.009
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +1
Query: 94 PVLKNSP-NAFLSKTLLDRY-RDLPLPEDKVLATYIWIDGSG--EHVRCKDRTLNYIPRL 261
P +K+ P + FL + L + R P P+ +A Y W DG G VR KD Y+ R
Sbjct: 60 PPVKDLPVHGFLPECLNGEFVRVGPNPKFDAVAGYHWFDGDGMIHGVRIKDGKATYVSRY 119
Query: 262 LKTCR 276
+KT R
Sbjct: 120 VKTSR 124
>At5g16570.1 68418.m01939 glutamine synthetase, putative similar to
glutamine synthetase, cytosolic isozyme (glutamate--
ammonia ligase) [Alfalfa] SWISS-PROT:P04078
Length = 356
Score = 35.1 bits (77), Expect = 0.012
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +1
Query: 154 DLPLPEDKVLATYIWIDGSGEHVRCKDRTL 243
DL D+++A YIWI GSG +R K RTL
Sbjct: 11 DLSDSTDQIIAEYIWIGGSGLDMRSKARTL 40
>At5g35630.1 68418.m04253 glutamine synthetase (GS2) identical to
glutamine synthetase, chloroplast precursor (glutamate--
ammonia ligase, GS2) [Arabidopsis thaliana]
SWISS-PROT:Q43127
Length = 430
Score = 34.3 bits (75), Expect = 0.021
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +1
Query: 172 DKVLATYIWIDGSGEHVRCKDRTL 243
D+++A YIWI GSG +R K RT+
Sbjct: 75 DRIIAEYIWIGGSGIDLRSKSRTI 98
>At3g17820.1 68416.m02272 glutamine synthetase (GS1) identical to
glutamine synthetase, cytosolic isozyme (glutamate--
ammonia ligase, GS1) [Arabidopsis thaliana]
SWISS-PROT:Q9LVI8
Length = 354
Score = 34.3 bits (75), Expect = 0.021
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1
Query: 175 KVLATYIWIDGSGEHVRCKDRTL 243
K++A YIWI GSG +R K RTL
Sbjct: 18 KIIAEYIWIGGSGMDIRSKARTL 40
>At1g66200.1 68414.m07514 glutamine synthetase, putative similar to
glutamine synthetase, cytosolic isozyme (Glutamate--
ammonia ligase, GS1) [Lotus japonicus] SWISS-PROT:Q42899
Length = 356
Score = 34.3 bits (75), Expect = 0.021
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 154 DLPLPEDKVLATYIWIDGSGEHVRCKDRTL 243
D+ +K++A YIW+ GSG +R K RTL
Sbjct: 11 DISDNSEKIIAEYIWVGGSGMDMRSKARTL 40
>At1g48470.1 68414.m05418 glutamine synthetase, putative similar to
glutamine synthetase, cytosolic isozyme (glutamate--
ammonia ligase, GS1) [Arabidopsis thaliana]
SWISS-PROT:Q9LVI8
Length = 353
Score = 34.3 bits (75), Expect = 0.021
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1
Query: 175 KVLATYIWIDGSGEHVRCKDRTL 243
K++A YIWI GSG +R K RTL
Sbjct: 18 KIIAEYIWIGGSGMDIRSKARTL 40
>At3g62900.1 68416.m07066 expressed protein ; expression supported by
MPSS
Length = 1401
Score = 27.5 bits (58), Expect = 2.4
Identities = 22/74 (29%), Positives = 32/74 (43%)
Frame = +3
Query: 45 VGNSKQSARHSRNSIGSGAKELSKCIPLEDTVGPVQRSTAAGRQGPRHIHMDRRLRRACS 224
+G KQS+ H R S S AK+ K + Q + R GPRHI ++++
Sbjct: 1011 LGEGKQSSDHHRRSNDSLAKKSGKG-SSSRSKEKSQSIRSDSRDGPRHI--EKKIYDGSP 1067
Query: 225 LQRQDFELHSQTPK 266
R D + PK
Sbjct: 1068 DSRADMIVRPNIPK 1081
>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 541
Score = 26.6 bits (56), Expect = 4.2
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -3
Query: 283 FHIGRSLGVWEC 248
FH+G+ GVWEC
Sbjct: 182 FHLGKGEGVWEC 193
>At1g61600.1 68414.m06941 expressed protein
Length = 421
Score = 26.6 bits (56), Expect = 4.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 157 LPLPEDKVLATYIWIDGSGEHVRCKDRTLNYIPRL 261
LPLP+DK+L+ + +D SG + L +IP L
Sbjct: 56 LPLPQDKILSV-VHLDSSGNRETSVKKVL-FIPAL 88
>At1g07420.2 68414.m00792 sterol 4-alpha-methyl-oxidase 2 (SMO2)
identical to sterol 4-alpha-methyl-oxidase GI:16973471
from [Arabidopsis thaliana]; identical to cDNA sterol
4-alpha-methyl-oxidase GI:16973470
Length = 228
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -2
Query: 338 RCVSEFVLVVWPVELPSVIPYRQVFRSLGM 249
+C++ +L + V LP ++ VFR++GM
Sbjct: 29 KCITRLLLYHFSVNLPLMLASYPVFRAMGM 58
>At1g07420.1 68414.m00791 sterol 4-alpha-methyl-oxidase 2 (SMO2)
identical to sterol 4-alpha-methyl-oxidase GI:16973471
from [Arabidopsis thaliana]; identical to cDNA sterol
4-alpha-methyl-oxidase GI:16973470
Length = 266
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -2
Query: 338 RCVSEFVLVVWPVELPSVIPYRQVFRSLGM 249
+C++ +L + V LP ++ VFR++GM
Sbjct: 67 KCITRLLLYHFSVNLPLMLASYPVFRAMGM 96
>At3g43600.1 68416.m04639 aldehyde oxidase, putative identical to gi:
3172025; identical to cDNA putative aldehyde oxidase
(AO3) mRNA, partial cds GI:2792303
Length = 1321
Score = 25.8 bits (54), Expect = 7.4
Identities = 7/23 (30%), Positives = 14/23 (60%)
Frame = -3
Query: 247 SSKSCLCNEHARRSRRSICMWRG 179
+S C + + +R+ +CMW+G
Sbjct: 1256 ASVHCATRQAVKEARKQLCMWKG 1278
>At1g35680.1 68414.m04436 50S ribosomal protein L21, chloroplast /
CL21 (RPL21) identical to 50S ribosomal protein L21,
chloroplast precursor (CL21) [Arabidopsis thaliana]
SWISS-PROT:P51412
Length = 220
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 250 CSSKSCLCNEHARRSRRSICMWRGPCLPAAVDL 152
CS+ S CN ++RRS +C P L A L
Sbjct: 11 CSTFSAHCNVNSRRSSTILCSLSKPSLNLAKPL 43
>At2g28390.1 68415.m03450 SAND family protein similar to Sand
(GI:3928166) [Takifugu rubripes]; contains Pfam PF03164:
SAND family protein
Length = 607
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 147 VQRSTAAGRQGPRHIHMDRRLRRACSLQRQD 239
VQRS A G + +DRR R + + Q QD
Sbjct: 448 VQRSIAEGGMRVEDVPIDRRRRSSTTNQEQD 478
>At2g17370.1 68415.m02006 3-hydroxy-3-methylglutaryl-CoA reductase 2
/ HMG-CoA reductase 2 (HMGR2) identical to SP|P43256
3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 (EC
1.1.1.34) (HMG- CoA reductase 2) (HMGR2) {Arabidopsis
thaliana}
Length = 562
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 172 DKVLATYIWIDGSGEHVRCK 231
DK + WI+G G+HV C+
Sbjct: 371 DKKASAVNWIEGRGKHVVCE 390
>At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains
Pfam PF00684 : DnaJ central domain (4 repeats); similar
to bundle sheath defective protein 2 (GI:4732091) [Zea
mays]
Length = 154
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 87 IGSGAKELSKCIPLEDTVGPVQRSTAAGRQGPRHIHMDRR 206
+G G KE+S CI D G + +T G G + ++DRR
Sbjct: 111 LGGGEKEVSNCINC-DGAGSLTCTTCQG-SGVQPRYLDRR 148
>At1g61550.1 68414.m06934 S-locus protein kinase, putative similar
to receptor protein kinase [Ipomoea trifida]
gi|836954|gb|AAC23542; contains S-locus glycoprotein
family domain, Pfam:PF00954
Length = 802
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 112 PNAFLSKTLLDRYRDLPLPEDKVLATYIWIDGS 210
PN ++L DLPLP++ A + DGS
Sbjct: 751 PNTLELLSMLTTTSDLPLPKEPTFAVHTSDDGS 783
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,344,496
Number of Sequences: 28952
Number of extensions: 152868
Number of successful extensions: 435
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 399440640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -