Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1079
         (450 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   1.8  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   7.1  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           20   9.4  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -2

Query: 446 PPFPGPMKILKESLLLQRGSTPYGSVDRSSPPSLPS 339
           P  P    +L E   L RG      V  + PP+LP+
Sbjct: 96  PRCPSGESMLSERAALLRGVPTLSPVGVALPPTLPA 131



 Score = 21.4 bits (43), Expect = 4.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 347 LPSNKCGSRNKSTTSLAPPLYTG 279
           LP+++C SR  S + + P   +G
Sbjct: 79  LPNSRCNSRESSDSLVQPRCPSG 101


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 316 RVRRVWPLHCTQ 281
           R   +WPL C+Q
Sbjct: 566 RTAAIWPLWCSQ 577


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 441 IPGTNEDFKGIIAPPER 391
           IPG N   K  IAP ER
Sbjct: 301 IPGQNPGEKTNIAPRER 317


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,033
Number of Sequences: 336
Number of extensions: 1968
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)