Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1079
(450 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 100 9e-23
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 58 8e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 52 3e-08
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 51 9e-08
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 38 0.001
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 36 0.002
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 0.76
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 2.3
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 5.4
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 5.4
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 5.4
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 7.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 100 bits (240), Expect = 9e-23
Identities = 44/47 (93%), Positives = 46/47 (97%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
I+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 329 IVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 57.6 bits (133), Expect = 8e-10
Identities = 23/44 (52%), Positives = 34/44 (77%), Gaps = 3/44 (6%)
Frame = -1
Query: 396 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 274
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 389 ERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 52.4 bits (120), Expect = 3e-08
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = -1
Query: 384 SVWIGGSILASLSTFQQMWISKQEYDESG 298
+VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 390 AVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 50.8 bits (116), Expect = 9e-08
Identities = 25/57 (43%), Positives = 39/57 (68%)
Frame = -1
Query: 441 IPGTNEDFKGIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
I G K I A PER ++ W+GGSILASLSTF+++ I+ +EY ++ +++ R+ F
Sbjct: 325 ISGKKNQVK-IYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 37.5 bits (83), Expect = 0.001
Identities = 15/35 (42%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Frame = -1
Query: 399 PERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 298
P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 344 PRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 36.3 bits (80), Expect = 0.002
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 280
+I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 376 VISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 0.76
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -1
Query: 378 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 277
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 2.3
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -2
Query: 413 ESLLLQRGSTPYGSVDRSSPPSLPSNKCGSRNKSTTSLAPP 291
++ L + TP + PPS+PS++ R S ++ APP
Sbjct: 214 KAYLNESAGTPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.0 bits (52), Expect = 5.4
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -2
Query: 380 YGSVDRSSPPSLPSNKCG--SRNKSTTSLAP 294
Y + SSPP P N G + N +TTS P
Sbjct: 1613 YNASFSSSPPPQPGNSSGMSAMNTNTTSTTP 1643
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 319 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 405
F HLL + G+D + + YG L W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.0 bits (52), Expect = 5.4
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -2
Query: 380 YGSVDRSSPPSLPSNKCG--SRNKSTTSLAP 294
Y + SSPP P N G + N +TTS P
Sbjct: 1613 YNASFSSSPPPQPGNSSGMSAMNTNTTSTTP 1643
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 24.6 bits (51), Expect = 7.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 351 LSTFQQMWISKQEYDESGPSIV 286
L + + W KQ++DES S+V
Sbjct: 2195 LQKWYEEWCGKQDWDESDKSVV 2216
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,742,818
Number of Sequences: 5004
Number of extensions: 31467
Number of successful extensions: 86
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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