Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1079
(450 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 105 2e-23
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 105 2e-23
SB_56| Best HMM Match : Actin (HMM E-Value=0) 105 2e-23
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 105 2e-23
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 103 5e-23
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 103 5e-23
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 95 2e-20
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 46 2e-05
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.005
SB_59679| Best HMM Match : Lectin_C (HMM E-Value=5.3e-10) 31 0.58
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 29 1.8
SB_12780| Best HMM Match : SAC3_GANP (HMM E-Value=3.7e-07) 28 4.1
SB_39925| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_35821| Best HMM Match : TUDOR (HMM E-Value=0) 27 7.2
SB_24093| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-13) 27 7.2
SB_2626| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_50497| Best HMM Match : CH (HMM E-Value=0.0084) 27 9.5
SB_15028| Best HMM Match : Drf_FH1 (HMM E-Value=0.84) 27 9.5
SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_3122| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 105 bits (251), Expect = 2e-23
Identities = 47/47 (100%), Positives = 47/47 (100%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 330 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 105 bits (251), Expect = 2e-23
Identities = 47/47 (100%), Positives = 47/47 (100%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 329 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 105 bits (251), Expect = 2e-23
Identities = 47/47 (100%), Positives = 47/47 (100%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 329 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 105 bits (251), Expect = 2e-23
Identities = 47/47 (100%), Positives = 47/47 (100%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 330 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 103 bits (248), Expect = 5e-23
Identities = 46/47 (97%), Positives = 47/47 (100%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP+IVHRKCF
Sbjct: 292 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 338
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 103 bits (248), Expect = 5e-23
Identities = 46/47 (97%), Positives = 47/47 (100%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP+IVHRKCF
Sbjct: 303 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 349
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 95.1 bits (226), Expect = 2e-20
Identities = 41/47 (87%), Positives = 44/47 (93%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
+IAPPERKYSVWIGGSILASLSTFQQMWI+K+EY E GP IVHRKCF
Sbjct: 103 VIAPPERKYSVWIGGSILASLSTFQQMWIAKEEYHEYGPPIVHRKCF 149
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 45.6 bits (103), Expect = 2e-05
Identities = 22/51 (43%), Positives = 31/51 (60%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF*THR 259
+I+ ++Y+VW GGS+LAS F + +K +YDE GPSI F HR
Sbjct: 294 VISHHMQRYAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF-LHR 343
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 37.5 bits (83), Expect = 0.005
Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = -1
Query: 402 PPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 298
PP RK+ V++GG++LA + W++++EY+E G
Sbjct: 364 PPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399
>SB_59679| Best HMM Match : Lectin_C (HMM E-Value=5.3e-10)
Length = 849
Score = 30.7 bits (66), Expect = 0.58
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -2
Query: 449 APPFPGPMKILKESLLLQRGSTPYGSVDRSSPPSLP 342
APP P P K++K S +QRG P+ V +PP P
Sbjct: 316 APPTPKPPKMMKFS--VQRGPRPHFHVPNWAPPPKP 349
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = -1
Query: 396 ERKYSVWIGGSILASL 349
E++++ WIGGSILASL
Sbjct: 215 EKRFNPWIGGSILASL 230
>SB_12780| Best HMM Match : SAC3_GANP (HMM E-Value=3.7e-07)
Length = 436
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = -2
Query: 431 PMKILKESLLLQRGSTPY----GSVDRSSPPSLPSNKCGSRNKSTTSLAP 294
P +L + L G TP G+ S+P ++P + + N STTSL+P
Sbjct: 102 PGTLLSKPSLPYPGYTPSNQLAGTTRPSAPATIPHSTTNTDNSSTTSLSP 151
>SB_39925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 377 GSVDRSSPPSLPSNKCGSRNKSTTSLAP 294
G+ S+P ++P + + N STTSL+P
Sbjct: 16 GTTRPSAPATIPHSTTNTDNSSTTSLSP 43
>SB_35821| Best HMM Match : TUDOR (HMM E-Value=0)
Length = 754
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 389 STPYGSVDRSSPPSLPSNKCGSRNKSTTSLAPPLYTG 279
S YG +S+P S+ +NK R + PPL +G
Sbjct: 571 SAGYGKEAKSAPVSIAANKPFIRPSQDQQVMPPLISG 607
>SB_24093| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-13)
Length = 305
Score = 27.1 bits (57), Expect = 7.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 382 GVLPLWRSNDSFKIFIGP 435
G LP WR +D+F IF+ P
Sbjct: 83 GALPSWRIHDAFYIFVLP 100
>SB_2626| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 27.1 bits (57), Expect = 7.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 382 GVLPLWRSNDSFKIFIGP 435
G LP WR +D+F IF+ P
Sbjct: 83 GALPSWRIHDAFYIFVLP 100
>SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)
Length = 2086
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +3
Query: 207 DYKPELSSRPRAAGGSTRGAFRSTSCVQWRGQTRRT 314
D KP++ +P+A+G +TR ++T+ + + T
Sbjct: 1854 DGKPQIELKPKASGAATRMTSKTTTVTKGASPAKTT 1889
>SB_15028| Best HMM Match : Drf_FH1 (HMM E-Value=0.84)
Length = 944
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +3
Query: 207 DYKPELSSRPRAAGGSTRGAFRSTSCVQWRGQTRRT 314
D KP++ +P+A+G +TR ++T+ + + T
Sbjct: 712 DGKPQIEIKPKASGAATRMTSKTTTVTKGASPAKTT 747
>SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 583
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 389 STPYGSVDRSSPPSLPSNKCGSRNKSTTSLAPPLYT 282
STP +V PP PSN+ + +K S +P T
Sbjct: 217 STPQATVQTPPPPPEPSNEPSTSSKPKASPSPSSIT 252
>SB_3122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1246
Score = 26.6 bits (56), Expect = 9.5
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -2
Query: 446 PPFPGPMKILKESLLLQRGSTPYGSVDRSSPPSLPSNKCGSRNKSTTS 303
PP P + +++ + S+ YG +D S S +NK GS KS S
Sbjct: 1060 PPSVLPNHVKAQAVRPKEPSSTYGKLDEISIESGTTNKIGSTLKSKGS 1107
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,564,211
Number of Sequences: 59808
Number of extensions: 272093
Number of successful extensions: 694
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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