Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1079
(450 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 105 2e-23
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 105 2e-23
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 105 2e-23
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 105 2e-23
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 105 2e-23
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 105 2e-23
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 105 2e-23
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 105 2e-23
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 105 2e-23
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 105 2e-23
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 105 2e-23
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 75 2e-14
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 58 2e-09
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 46 1e-05
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z93381-1|CAB07604.1| 509|Caenorhabditis elegans Hypothetical pr... 28 3.6
Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical pr... 27 4.8
AF016673-3|AAB66122.2| 366|Caenorhabditis elegans Hypothetical ... 27 4.8
AC006801-1|AAF60752.2| 501|Caenorhabditis elegans Hypothetical ... 27 4.8
U41275-1|AAA82464.1| 237|Caenorhabditis elegans Hypothetical pr... 27 8.3
AC084159-2|AAK39359.1| 659|Caenorhabditis elegans Hypothetical ... 27 8.3
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 105 bits (251), Expect = 2e-23
Identities = 47/47 (100%), Positives = 47/47 (100%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 329 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 105 bits (251), Expect = 2e-23
Identities = 47/47 (100%), Positives = 47/47 (100%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 330 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 105 bits (251), Expect = 2e-23
Identities = 47/47 (100%), Positives = 47/47 (100%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 330 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 105 bits (251), Expect = 2e-23
Identities = 47/47 (100%), Positives = 47/47 (100%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 330 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 105 bits (251), Expect = 2e-23
Identities = 47/47 (100%), Positives = 47/47 (100%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 330 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 105 bits (251), Expect = 2e-23
Identities = 47/47 (100%), Positives = 47/47 (100%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 329 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 105 bits (251), Expect = 2e-23
Identities = 47/47 (100%), Positives = 47/47 (100%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 330 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 105 bits (251), Expect = 2e-23
Identities = 47/47 (100%), Positives = 47/47 (100%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 330 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 105 bits (251), Expect = 2e-23
Identities = 47/47 (100%), Positives = 47/47 (100%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 286 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 332
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 105 bits (251), Expect = 2e-23
Identities = 47/47 (100%), Positives = 47/47 (100%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 316 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 362
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 105 bits (251), Expect = 2e-23
Identities = 47/47 (100%), Positives = 47/47 (100%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 330 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 75.4 bits (177), Expect = 2e-14
Identities = 32/41 (78%), Positives = 34/41 (82%)
Frame = -1
Query: 396 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKC 274
ERKY WIGGSIL SL TFQQMW+SK EYDESG SIV +KC
Sbjct: 395 ERKYGAWIGGSILGSLGTFQQMWVSKAEYDESGKSIVEKKC 435
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 58.4 bits (135), Expect = 2e-09
Identities = 24/47 (51%), Positives = 34/47 (72%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
I A ER WIGGSI+ASL TF++MW+ K+EY++ G S +H++ F
Sbjct: 328 ISASQERNSLTWIGGSIVASLDTFRKMWLGKKEYEDMGASAMHKRFF 374
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 46.0 bits (104), Expect = 1e-05
Identities = 21/41 (51%), Positives = 29/41 (70%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 289
+I+ ++Y+VW GGS+LAS S F Q+ +K EY E GPSI
Sbjct: 374 VISHKMQRYAVWFGGSMLASTSEFYQVSHTKAEYMERGPSI 414
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 45.6 bits (103), Expect = 2e-05
Identities = 20/40 (50%), Positives = 29/40 (72%), Gaps = 2/40 (5%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASL--STFQQMWISKQEYDESG 298
I APP RK+ V++GG++LA+L Q W+SK+EY+E G
Sbjct: 344 IEAPPSRKHMVFLGGAVLANLMKDRDQDFWVSKKEYEEGG 383
>Z93381-1|CAB07604.1| 509|Caenorhabditis elegans Hypothetical
protein F28G4.1 protein.
Length = 509
Score = 27.9 bits (59), Expect = 3.6
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -2
Query: 440 FPGPMKILKESLLLQRGSTPYGSVDRSSPPSLPSNKCGSRN 318
FP ++I+ LLLQR + + ++ +P + +K GSR+
Sbjct: 398 FPKGVRIIVMPLLLQRNPLIFDNPNQYNPENFSEDKIGSRH 438
>Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical
protein C27B7.5 protein.
Length = 386
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -3
Query: 331 VDLETR--VRRVWPLHCTQEVLLNAPRVLPPAAR 236
+ +ETR V R H + ++N PRVLPP R
Sbjct: 339 LSIETRRTVMRDGEFHFEETTIINFPRVLPPNVR 372
>AF016673-3|AAB66122.2| 366|Caenorhabditis elegans Hypothetical
protein T06D4.2 protein.
Length = 366
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -2
Query: 410 SLLLQRGSTPYGSVDRSSPPSLPSNKCG 327
S + RGS G VD SSP PSN G
Sbjct: 25 SFVETRGSCSSGDVDESSPSCSPSNHNG 52
>AC006801-1|AAF60752.2| 501|Caenorhabditis elegans Hypothetical
protein Y52D5A.2 protein.
Length = 501
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -2
Query: 440 FPGPMKILKESLLLQRGSTPYGSVDRSSPPSLPSNKCGSRNKSTTSLAPP 291
FP + K+ ++L G + S + + PPS GS++ + S PP
Sbjct: 449 FPSLRRKNKDQVILPAGISVGPSSNSTKPPSSEQPNTGSQSSNAPSTPPP 498
>U41275-1|AAA82464.1| 237|Caenorhabditis elegans Hypothetical
protein T25D1.3 protein.
Length = 237
Score = 26.6 bits (56), Expect = 8.3
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -1
Query: 360 LASLSTFQQMWISKQEYDESGPSIVHRKCF*THRACCL 247
L + T +Q IS+ E+ PS+VHRK F AC L
Sbjct: 104 LGNWMTGKQRLISETMNLENLPSVVHRKLFKMFDACDL 141
>AC084159-2|AAK39359.1| 659|Caenorhabditis elegans Hypothetical
protein Y73B3A.1 protein.
Length = 659
Score = 26.6 bits (56), Expect = 8.3
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +1
Query: 43 IRFSTYNHHS*DYKKSFGECSTGPAV 120
I F YN S K+ GECST PAV
Sbjct: 516 IAFVEYNSRS-SRKRKAGECSTPPAV 540
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,949,851
Number of Sequences: 27780
Number of extensions: 194436
Number of successful extensions: 545
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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