Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1079
(450 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 102 1e-22
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 100 4e-22
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 100 4e-22
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 100 4e-22
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 100 4e-22
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 100 4e-22
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 99 1e-21
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 99 1e-21
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 92 1e-19
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 87 4e-18
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 79 1e-15
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 70 6e-13
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 58 4e-09
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 57 5e-09
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 41 4e-04
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 40 0.001
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 38 0.003
At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein ... 28 3.4
At2g20920.1 68415.m02467 expressed protein 27 5.9
At1g58370.1 68414.m06640 glycosyl hydrolase family 10 protein / ... 27 5.9
At5g43500.2 68418.m05318 expressed protein 27 7.7
At5g43500.1 68418.m05319 expressed protein 27 7.7
At3g26310.1 68416.m03283 cytochrome P450 family protein contains... 27 7.7
At3g18890.1 68416.m02399 expressed protein similar to UV-B and o... 27 7.7
At1g26850.2 68414.m03274 dehydration-responsive family protein s... 27 7.7
At1g26850.1 68414.m03273 dehydration-responsive family protein s... 27 7.7
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 102 bits (244), Expect = 1e-22
Identities = 44/47 (93%), Positives = 46/47 (97%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct: 331 VVAPPERKYSVWIGGSILASLSTFQQMWISKSEYDESGPSIVHRKCF 377
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 100 bits (240), Expect = 4e-22
Identities = 43/47 (91%), Positives = 46/47 (97%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
++APPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct: 331 VVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 100 bits (240), Expect = 4e-22
Identities = 43/47 (91%), Positives = 46/47 (97%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
++APPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct: 331 VVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 100 bits (240), Expect = 4e-22
Identities = 43/47 (91%), Positives = 46/47 (97%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
++APPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct: 331 VVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 100 bits (240), Expect = 4e-22
Identities = 43/47 (91%), Positives = 46/47 (97%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
++APPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct: 331 VVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 100 bits (240), Expect = 4e-22
Identities = 43/47 (91%), Positives = 46/47 (97%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
++APPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct: 331 VVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 99.1 bits (236), Expect = 1e-21
Identities = 42/47 (89%), Positives = 45/47 (95%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GP IVHRKCF
Sbjct: 331 VVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDEAGPGIVHRKCF 377
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 99.1 bits (236), Expect = 1e-21
Identities = 42/47 (89%), Positives = 45/47 (95%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GP IVHRKCF
Sbjct: 331 VVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDEAGPGIVHRKCF 377
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 92.3 bits (219), Expect = 1e-19
Identities = 38/47 (80%), Positives = 45/47 (95%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
I+APPERKYSVWIGGSILASLST++QMWI+K EY+E+GP+IVH KCF
Sbjct: 283 IVAPPERKYSVWIGGSILASLSTYEQMWITKAEYEENGPAIVHTKCF 329
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 87.4 bits (207), Expect = 4e-18
Identities = 36/47 (76%), Positives = 42/47 (89%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
++APPERKYSVW+GGSILASLS+F MWI+K EYDE G +IVHRKCF
Sbjct: 332 VVAPPERKYSVWVGGSILASLSSFAPMWITKAEYDEQGGAIVHRKCF 378
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 79.4 bits (187), Expect = 1e-15
Identities = 33/46 (71%), Positives = 39/46 (84%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKC 274
++ PPE + SVWIGGSILASLSTF QMWI+K EY+E G +IVHRKC
Sbjct: 320 VVVPPESECSVWIGGSILASLSTFHQMWITKDEYEEHGAAIVHRKC 365
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 70.1 bits (164), Expect = 6e-13
Identities = 29/41 (70%), Positives = 34/41 (82%)
Frame = -1
Query: 396 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKC 274
ER++SVWIGGSILASL +FQQMW SK EY+E G S + RKC
Sbjct: 400 ERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKC 440
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 57.6 bits (133), Expect = 4e-09
Identities = 25/31 (80%), Positives = 29/31 (93%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISK 319
++APPERKYSVWIGGSILASLSTFQQ+ I +
Sbjct: 331 VVAPPERKYSVWIGGSILASLSTFQQVKIDQ 361
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 57.2 bits (132), Expect = 5e-09
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = -1
Query: 387 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
YS W+GG+ILA + Q ++K +YDE+GPS+VHRKCF
Sbjct: 325 YSAWVGGAILAKVVFPQNQHVTKADYDETGPSVVHRKCF 363
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 40.7 bits (91), Expect = 4e-04
Identities = 16/41 (39%), Positives = 28/41 (68%)
Frame = -1
Query: 411 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 289
+++ P ++++VW GGS+L+S F +K+EY+E G SI
Sbjct: 376 VVSHPVQRFAVWFGGSVLSSTPEFFASCRTKEEYEEYGASI 416
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 39.5 bits (88), Expect = 0.001
Identities = 23/60 (38%), Positives = 33/60 (55%)
Frame = -1
Query: 450 RPPIPGTNEDFKGIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 271
RP +P + D K I + VW GGS+LAS F+ M ++K EY+E G + R+ F
Sbjct: 363 RPLVPD-HFDVK-ITTQEDPILGVWRGGSLLASSPDFESMCVTKAEYEELGSARCRRRFF 420
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 37.9 bits (84), Expect = 0.003
Identities = 14/42 (33%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Frame = -1
Query: 402 PPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESGPSIVHR 280
PP RK+ V++GG++LA + + WI++++Y E G + +++
Sbjct: 344 PPRRKHMVYLGGAVLAGIMKDAPEFWINREDYMEEGINCLNK 385
>At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein
contains Pfam profile: PF01363 FYVE zinc finger
Length = 601
Score = 27.9 bits (59), Expect = 3.4
Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Frame = -2
Query: 449 APPFPGPMKILKESLLLQRGSTPYGSVDRSSPPSLPSNKCGSR---NKSTTSLAPPLYT 282
APPF G S Q TPYG PPS PS S+ + TSL P Y+
Sbjct: 52 APPFTGGYGSADYSNYSQN-YTPYGQNSEHVPPSAPSFTSPSQPPPSPPATSLNPNSYS 109
>At2g20920.1 68415.m02467 expressed protein
Length = 287
Score = 27.1 bits (57), Expect = 5.9
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -3
Query: 361 PRLPLYLPTNVDLETRVRRVWPLHCTQEVLLNAPRVLPPAARGR 230
P PLYLPT + +R ++W +L R PP A R
Sbjct: 22 PLHPLYLPTKLQFPSRKTQLW--RSAAILLPTRRRCAPPRASSR 63
>At1g58370.1 68414.m06640 glycosyl hydrolase family 10 protein /
carbohydrate-binding domain-containing protein similar
to (1,4)-beta-xylan endohydrolase GI:5306060 from
[Triticum aestivum] ; contains Pfam profiles PF00331:
Glycosyl hydrolase family 10, PF02018: Carbohydrate
binding domain
Length = 917
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 292 HCTQEVLLNAPRVLPPAARGRL 227
+CT V +PR+LPP AR L
Sbjct: 389 NCTLSVAEGSPRILPPMARDSL 410
>At5g43500.2 68418.m05318 expressed protein
Length = 584
Score = 26.6 bits (56), Expect = 7.7
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -1
Query: 396 ERKYSVWIGGSILASLSTFQQMWISKQEYDESG 298
E ++ W GG+IL L ++ WI + ++ +G
Sbjct: 527 EPQFVTWKGGAILGILDFGREAWIERHQWMVNG 559
>At5g43500.1 68418.m05319 expressed protein
Length = 596
Score = 26.6 bits (56), Expect = 7.7
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -1
Query: 396 ERKYSVWIGGSILASLSTFQQMWISKQEYDESG 298
E ++ W GG+IL L ++ WI + ++ +G
Sbjct: 539 EPQFVTWKGGAILGILDFGREAWIERHQWMVNG 571
>At3g26310.1 68416.m03283 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 500
Score = 26.6 bits (56), Expect = 7.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 358 RLPLYLPTNVDLETRVRRVWPLHCTQEVLLNAPRVL 251
R+P + ++ D +V RV LHC L+ PR L
Sbjct: 71 RVPTVVVSSSDTARQVLRVHDLHCCTRPSLSGPREL 106
>At3g18890.1 68416.m02399 expressed protein similar to UV-B and
ozone similarly regulated protein 1 UOS1 [Pisum sativum]
GI:20339364
Length = 641
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 398 QRGSTPYGSVDRSSPPSLPSNKCGSRNKSTTSLAP 294
+R +PY + PPS PS S KS SL+P
Sbjct: 442 ERPLSPYARYENLKPPSSPSPTASSTRKS-DSLSP 475
>At1g26850.2 68414.m03274 dehydration-responsive family protein
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 616
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -3
Query: 415 RNHCSSREEVLRMDRWIDPRLPLYLPTNVDLETRVRRV 302
+N C++ + +L MDR + P + + +VD +V+R+
Sbjct: 540 KNKCNADDILLEMDRILRPEGAVIIRDDVDTLIKVKRI 577
>At1g26850.1 68414.m03273 dehydration-responsive family protein
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 616
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -3
Query: 415 RNHCSSREEVLRMDRWIDPRLPLYLPTNVDLETRVRRV 302
+N C++ + +L MDR + P + + +VD +V+R+
Sbjct: 540 KNKCNADDILLEMDRILRPEGAVIIRDDVDTLIKVKRI 577
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,458,029
Number of Sequences: 28952
Number of extensions: 185367
Number of successful extensions: 509
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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