Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1077
         (435 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    27   1.2  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    27   1.6  
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    25   6.7  

>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 193 LRDYEMFKGALNGTEFNFVLASYRSQIFLSVTGITYTIFYILFVFLFGN 339
           LRD     G +      FVL      I+ S+  I Y + Y+LFVF  G+
Sbjct: 214 LRDVAFLTGTIL-LVIMFVLHDGSLSIWQSLVMILYYLLYVLFVFFSGS 261


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 99  TERGVRPSATFVLHCGLIKGLRKRQCILKSLITRLRNV*RSIK 227
           TE G+R    F +HC LI    +     KS I  +R+  +S K
Sbjct: 181 TEGGMRYQPHFAIHCVLINSWSESDQEKKSFIDLVRSTAKSYK 223


>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 77  EARKQGLDGTRCASVGYLCVTLRSNQRIT 163
           E + QGL+     S  + C +L SNQ +T
Sbjct: 49  EIQPQGLEKLNADSSNFYCNSLTSNQSLT 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,650,913
Number of Sequences: 5004
Number of extensions: 29559
Number of successful extensions: 49
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)