Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1077
         (435 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410...    28   2.9  
03_03_0249 + 15832086-15833261                                         27   6.6  

>06_01_0579 +
           4099039-4099086,4099798-4099848,4100151-4100286,
           4100287-4100401,4100496-4100528,4101037-4101166,
           4101663-4101751,4102042-4102148,4102238-4102309,
           4102384-4102764,4104907-4105064,4105581-4105674,
           4106082-4106089,4106297-4106387,4107136-4107289,
           4108257-4108377,4108468-4108551,4108946-4109065,
           4109181-4109393,4109482-4109544,4109668-4109783,
           4110132-4110190,4111126-4111445
          Length = 920

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 127 PLCYIAV*SKDYGNDNVYLNR*LRDYEMFKGALNG 231
           P+C     + DYGN+NV L + + D ++ K A+ G
Sbjct: 70  PVCCPPFMAGDYGNENVQLVKSISDLQLPKAAILG 104


>03_03_0249 + 15832086-15833261
          Length = 391

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 111 HRVPSRPCFRASPLLCYDDNGLTAYNANM 25
           H VP+ PC   +P+    D G+    AN+
Sbjct: 162 HYVPAVPCLAGNPVFHVSDTGVAVAGANI 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,054,011
Number of Sequences: 37544
Number of extensions: 173786
Number of successful extensions: 327
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)