SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1077
         (435 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC041125-1|AAH41125.1|  787|Homo sapiens KIAA1586 protein.             29   9.1  
AL450489-1|CAH71219.1|  787|Homo sapiens protein ( Human DNA seq...    29   9.1  

>BC041125-1|AAH41125.1|  787|Homo sapiens KIAA1586 protein.
          Length = 787

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 102 PSRPCFRASPLLCYDDNGLTAYNANMIFVK 13
           PSRP      L+C DD   +AY ++++F K
Sbjct: 38  PSRPVLEYIDLVCGDDENPSAYYSDILFPK 67


>AL450489-1|CAH71219.1|  787|Homo sapiens protein ( Human DNA
           sequence from clone RP11-203B9 on chromosome 6 Contains 
           the 3 'end of gene FLJ30162, a novel gene, the 5'end of
           gene  ).
          Length = 787

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 102 PSRPCFRASPLLCYDDNGLTAYNANMIFVK 13
           PSRP      L+C DD   +AY ++++F K
Sbjct: 38  PSRPVLEYIDLVCGDDENPSAYYSDILFPK 67


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,028,349
Number of Sequences: 237096
Number of extensions: 975944
Number of successful extensions: 2865
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2865
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3487985734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -