Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1077
         (435 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50795-2|CAA90663.1|  618|Caenorhabditis elegans Hypothetical pr...    29   1.1  
AC006615-4|AAK68233.2|  602|Caenorhabditis elegans Hypothetical ...    27   4.4  
Z82085-3|CAB04985.1|  180|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z81117-1|CAB03312.1|  431|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z77131-3|CAB00855.1|  156|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AF162674-1|AAF80462.1|  575|Caenorhabditis elegans CNT-like nucl...    27   7.8  
AF016413-4|AAM29683.1|  454|Caenorhabditis elegans Hypothetical ...    27   7.8  
AF016413-3|AAB65256.3|  555|Caenorhabditis elegans Hypothetical ...    27   7.8  

>Z50795-2|CAA90663.1|  618|Caenorhabditis elegans Hypothetical
           protein R166.2 protein.
          Length = 618

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +1

Query: 277 LSVTGITYTIFYILFVFLF--GNELE*NVHVSVGINIVI 387
           LSV  + + IF  L VFL+   NE    V V+VGI ++I
Sbjct: 366 LSVRSVLFNIFQSLIVFLYICDNETNTMVKVTVGIGLLI 404


>AC006615-4|AAK68233.2|  602|Caenorhabditis elegans Hypothetical
           protein C36B7.6 protein.
          Length = 602

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +1

Query: 256 SYRSQIFLSVTGITYTIFYILFVFLF--GNELE*NVHVSVGINIVI 387
           S +  + LSV  + + IF  L VFL+   NE    V  SVG  ++I
Sbjct: 354 SRKDLVGLSVRSVLFNIFQSLIVFLYICDNETNFMVKFSVGAGLLI 399


>Z82085-3|CAB04985.1|  180|Caenorhabditis elegans Hypothetical
           protein ZK218.4 protein.
          Length = 180

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +1

Query: 202 YEMFKGALNGTEFNFVLASYRSQIFLSVTGITYTIFYILFVFLFGNELE*NVHVSV 369
           YE + G L+   F     S     FL+   +T  +FY+LF+F+   EL   + +S+
Sbjct: 19  YETWLGLLSIDRFLSSRESAEPNRFLTQRSLT--VFYLLFIFVTAKELGFYLWISI 72


>Z81117-1|CAB03312.1|  431|Caenorhabditis elegans Hypothetical
           protein T06E6.1 protein.
          Length = 431

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 358 EHFIQVHCQTKRQIIYKIWCK 296
           + F++VH    R++I+KI+CK
Sbjct: 276 DRFLRVHDLQSRKLIHKIYCK 296


>Z77131-3|CAB00855.1|  156|Caenorhabditis elegans Hypothetical
           protein C54C6.4 protein.
          Length = 156

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 272 YFCQSPV*LTPYFIYYLSFCLAM 340
           YFC S + +T  F+Y+  FC  +
Sbjct: 105 YFCMSNIRMTFSFVYFCFFCFRL 127


>AF162674-1|AAF80462.1|  575|Caenorhabditis elegans CNT-like
           nucleoside transporter protein.
          Length = 575

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 283 VTGITYTIFYILFVFLFGN 339
           +TG    +FYILF+F+F N
Sbjct: 147 LTGFFAYVFYILFMFVFSN 165


>AF016413-4|AAM29683.1|  454|Caenorhabditis elegans Hypothetical
           protein F27E11.2b protein.
          Length = 454

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 283 VTGITYTIFYILFVFLFGN 339
           +TG    +FYILF+F+F N
Sbjct: 147 LTGFFAYVFYILFMFVFSN 165


>AF016413-3|AAB65256.3|  555|Caenorhabditis elegans Hypothetical
           protein F27E11.2a protein.
          Length = 555

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 283 VTGITYTIFYILFVFLFGN 339
           +TG    +FYILF+F+F N
Sbjct: 147 LTGFFAYVFYILFMFVFSN 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,121,548
Number of Sequences: 27780
Number of extensions: 167808
Number of successful extensions: 356
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)