Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1076
         (496 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000065DBC3 Cluster: Interleukin-1 receptor-like 2 pr...    33   3.5  
UniRef50_Q98RY6 Cluster: Putative uncharacterized protein orf519...    33   4.6  
UniRef50_Q8RF66 Cluster: Hydrolase; n=3; Fusobacterium nucleatum...    32   8.1  
UniRef50_A4CI94 Cluster: Type I restriction-modification system,...    32   8.1  

>UniRef50_UPI000065DBC3 Cluster: Interleukin-1 receptor-like 2
           precursor (IL-1Rrp2) (Interleukin-1 receptor-related
           protein 2) (IL1R-rp2).; n=1; Takifugu rubripes|Rep:
           Interleukin-1 receptor-like 2 precursor (IL-1Rrp2)
           (Interleukin-1 receptor-related protein 2) (IL1R-rp2). -
           Takifugu rubripes
          Length = 489

 Score = 33.1 bits (72), Expect = 3.5
 Identities = 20/67 (29%), Positives = 32/67 (47%)
 Frame = -1

Query: 457 RGAKGRWLPLSVQRKGLFISNTQK*TKIKLKFMDCRMTSGPIV*PMPNSLDTHSLSDGPS 278
           RG   R+LP+ ++  G +    +  T +K+KF              P +L+T S+S G +
Sbjct: 66  RGGLLRFLPVQMEHNGSYTCQKRDETNLKMKFSVLVSRE-----KCPEALETRSISQGRN 120

Query: 277 ACLPTKL 257
             LP KL
Sbjct: 121 GVLPCKL 127


>UniRef50_Q98RY6 Cluster: Putative uncharacterized protein orf519;
           n=1; Guillardia theta|Rep: Putative uncharacterized
           protein orf519 - Guillardia theta (Cryptomonas phi)
          Length = 519

 Score = 32.7 bits (71), Expect = 4.6
 Identities = 17/64 (26%), Positives = 32/64 (50%)
 Frame = +1

Query: 106 WYIELQ*CGEPVIRVVLSEFVYVTSIYTLYKKITLVSNLFPPFFIYSNFLLALLANKHSV 285
           +Y+ ++    P+I ++ S++ Y   I  + KK     NL  PFF+ S   +   +N   +
Sbjct: 295 FYLNIKKFFNPIILIIFSKYFYTIFIIQMKKKYK--KNLIYPFFLNSKAKILQFSNIQIL 352

Query: 286 HLTV 297
           H T+
Sbjct: 353 HYTL 356


>UniRef50_Q8RF66 Cluster: Hydrolase; n=3; Fusobacterium
           nucleatum|Rep: Hydrolase - Fusobacterium nucleatum
           subsp. nucleatum
          Length = 199

 Score = 31.9 bits (69), Expect = 8.1
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 166 VYVTSIYTLYKKITLVSNLFPPFFIYSNFLLALLANKH 279
           +++ +IYT YKKI++++N    +FI     +  L NKH
Sbjct: 49  IFIDNIYTKYKKISIIANSIGAYFI-----MVSLTNKH 81


>UniRef50_A4CI94 Cluster: Type I restriction-modification system, M
           subunit; n=1; Robiginitalea biformata HTCC2501|Rep: Type
           I restriction-modification system, M subunit -
           Robiginitalea biformata HTCC2501
          Length = 894

 Score = 31.9 bits (69), Expect = 8.1
 Identities = 20/49 (40%), Positives = 29/49 (59%)
 Frame = +1

Query: 145 RVVLSEFVYVTSIYTLYKKITLVSNLFPPFFIYSNFLLALLANKHSVHL 291
           R+++ E V VT I +  K  T VSN  PPF+++   L+AL  N + V L
Sbjct: 523 RIIVDEVVLVTLIGSSLKP-TFVSNSEPPFYLHHQ-LIALKPNPNLVDL 569


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 516,306,512
Number of Sequences: 1657284
Number of extensions: 10375271
Number of successful extensions: 24627
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24565
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28855457139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)