Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1076
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    29   0.38 
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    28   0.67 
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    26   2.7  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    26   2.7  
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   3.6  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   6.3  
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    25   8.3  
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    25   8.3  

>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 29.1 bits (62), Expect = 0.38
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +1

Query: 430 GGATFPWPPGGEILTQKRGGG 492
           G ATF W  GGE L  K  GG
Sbjct: 454 GAATFSWEDGGETLVVKGNGG 474


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 28.3 bits (60), Expect = 0.67
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -3

Query: 404 YFKYTKIDKNKTEI---HGLQNDVRADRLTH 321
           Y K  ++  NK  I   HGL+ND+ A RL H
Sbjct: 447 YIKIKELGMNKNTILIGHGLENDLNAMRLIH 477


>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = -3

Query: 179 LVTYT--NSLNTTRITGSPHHCNSIYQLL 99
           ++TYT  NSL +TR+TG  +H   I +LL
Sbjct: 190 ILTYTGHNSLASTRVTGITNHQFRILRLL 218


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 88  NLSTNPSITIRFNVARFH*QCHQHRSPPS 2
           NLS NPS  +  N A F  + H   +P S
Sbjct: 82  NLSPNPSFHVNINAAEFIPKSHNGYAPKS 110


>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 288

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = -3

Query: 428 FGTKKRPFYFKYTKIDKNKTEIHGLQNDVRADRLTHA*FVGYPLTVRWTECLFANKANKK 249
           F   +  F   ++KID   T +   + DVRA +L     +   +  R  E    N+ + K
Sbjct: 156 FAATESFFEMAFSKIDSCLTSVQSTKKDVRAKKLIRQLLIYQSIKSRLVERYIQNEESVK 215


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
            Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 173  TYTNSLNTTRITGSPHH 123
            +YT S+  T + G+PHH
Sbjct: 1060 SYTGSITETIVIGTPHH 1076


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 76  NPSITIRFNVARFH*QCHQHRSPPS 2
           N   T+  + +RFH + H H +PPS
Sbjct: 310 NVRTTLFSDDSRFHSKIHTHSTPPS 334


>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 488 PPLFWVKISPPGGQGKVAP 432
           PP F  ++SPP G+ K +P
Sbjct: 95  PPKFHYRLSPPPGEFKSSP 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,749
Number of Sequences: 5004
Number of extensions: 42492
Number of successful extensions: 108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)