Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1076
         (496 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0493 + 18299885-18299892,18300201-18300837,18301254-183016...    29   2.7  
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550     29   2.7  
12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-25...    27   6.3  
11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-23...    27   6.3  
05_03_0657 + 16694833-16694963,16695567-16695684,16696280-166963...    27   6.3  
01_05_0309 - 20713774-20713818,20713838-20713915,20714044-207142...    27   8.3  

>10_08_0493 +
           18299885-18299892,18300201-18300837,18301254-18301676,
           18301769-18302014,18302124-18302789,18303228-18303283,
           18303367-18303460,18303559-18303738
          Length = 769

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = -3

Query: 494 PP--PPLFWVKISPPGGQGKVAPPFGTKKRPFYFKYTKIDKNKTEIHGLQNDVRADRLT 324
           PP  PP     I PP G+  + PP+G   RP      +   N T   GL ND   D  T
Sbjct: 505 PPNDPPYGRPAIDPPYGRPAIDPPYG---RPAIDPPYRRPANDTSYGGLNNDGPRDPYT 560


>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
          Length = 204

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -3

Query: 491 PPPLFWVKISPPGGQGKVAPP 429
           PPP   VK SPP    KV PP
Sbjct: 77  PPPTIPVKFSPPAAPVKVPPP 97


>12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-250315,
            250429-250556,250764-250862,250953-251061,251301-251380,
            251464-251691,251768-251833,251970-252086,252538-252735,
            252847-252963,253056-253115,253228-253314,253419-253502,
            253623-253757,253837-253899,253979-254083,254174-254286,
            254374-254626,254715-254851,254970-255248,255352-256354,
            256450-256935,257023-257193,257285-257470,257820-257942,
            258024-258134,258225-258395
          Length = 1708

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 494  PPPPLFWVKISPPGGQGKVAPPFGTKKRPFY 402
            PPPP+    + P GG G   PP G    P Y
Sbjct: 1672 PPPPMGMPGMPPMGGMG--MPPMGPGPMPAY 1700


>11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-234912,
            235048-235175,235383-235481,235572-235680,235920-235999,
            236083-236310,236387-236452,236589-236705,237142-237339,
            237451-237567,237660-237719,237832-237918,238023-238106,
            238233-238367,238446-238508,238588-238692,238781-238893,
            238981-239233,239322-239458,239577-239855,239958-240960,
            241054-241539,241627-241797,241890-242075,242426-242548,
            242630-242740,242834-243004
          Length = 1708

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 494  PPPPLFWVKISPPGGQGKVAPPFGTKKRPFY 402
            PPPP+    + P GG G   PP G    P Y
Sbjct: 1672 PPPPMGMPGMPPMGGMG--MPPMGPGPMPAY 1700


>05_03_0657 +
           16694833-16694963,16695567-16695684,16696280-16696376,
           16700126-16700232,16700473-16700595,16700791-16700944,
           16701237-16701297,16701417-16701781,16701875-16703483,
           16703697-16703940
          Length = 1002

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 144 YNWFPASLQFNIPVIN 97
           Y W P SL+F IP+ N
Sbjct: 791 YEWIPLSLEFGIPLFN 806


>01_05_0309 -
           20713774-20713818,20713838-20713915,20714044-20714222,
           20714296-20714556,20715222-20715393,20715501-20715662,
           20716435-20716863,20717729-20717785,20717872-20718842,
           20719098-20719182,20719269-20719637,20719756-20720001,
           20720090-20720362,20720663-20720827,20721328-20721556,
           20721727-20722168,20723152-20724138,20724352-20724517,
           20725070-20725728,20725820-20726186
          Length = 2113

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 435 SHLPLAPRRGNFNPKKGGGG 494
           SHLP  PR G+ +   GGGG
Sbjct: 54  SHLPSPPREGSSSSGGGGGG 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,259,374
Number of Sequences: 37544
Number of extensions: 295447
Number of successful extensions: 736
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)