Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1076
         (496 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49932| Best HMM Match : DUF1518 (HMM E-Value=4.9)                   28   3.7  
SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)                   28   4.9  
SB_53724| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_8813| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.5  

>SB_49932| Best HMM Match : DUF1518 (HMM E-Value=4.9)
          Length = 276

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 423 TERGSHLPLAPRRGNFNPKKGGG 491
           T+R ++ P AP R +F+P+KG G
Sbjct: 103 TDRWANPPTAPSRSSFDPRKGLG 125


>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
          Length = 665

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -3

Query: 170 YTNSLNTTRITGSPHHCNSIYQLLIIFKFKH*SKYHYSLQCSTFPLTVPPA 18
           YT  +  T ++ S HHC+ +Y  +II+     S +H  L  +   +  PP+
Sbjct: 354 YTTVVIYTPLSSSIHHCHHLYTTVIIYTPPSSSIHHRHLYITV--IYTPPS 402


>SB_53724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1005

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 494 PPPPLFWVKISPPGGQGKVAPP 429
           PPPP+     +PP G+  V PP
Sbjct: 360 PPPPIAMPPPAPPKGKAMVKPP 381


>SB_8813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 413 RPFYFKYTKIDKNKTEIHGLQN 348
           +PFY + T IDKN  EI+ L N
Sbjct: 558 KPFYDEETVIDKNGNEINRLYN 579


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,592,829
Number of Sequences: 59808
Number of extensions: 311118
Number of successful extensions: 800
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)