Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1076
         (496 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    25   1.9  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    24   2.5  
AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical prot...    23   7.6  
AJ001042-1|CAA04496.1|  395|Anopheles gambiae putative gram nega...    23   7.6  
AF081533-1|AAD29854.1|  395|Anopheles gambiae putative gram nega...    23   7.6  
U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         22   10.0 
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         22   10.0 
EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    22   10.0 

>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 434 PPFGTKKRPFYFKYTKIDKNKTEIHGLQ 351
           PP    +RP Y+  ++ID+ ++  +G+Q
Sbjct: 278 PPRRQGRRPVYWWTSEIDRLRSHFYGMQ 305


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 179 LVTYTNSLNTTRITGSPHHCNS 114
           L+  + SLNT R+ GSP H ++
Sbjct: 403 LLDSSESLNTCRLHGSPTHLHN 424


>AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical protein
           protein.
          Length = 257

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 463 PLRGAKGRWLPLSVQRKGLFISNT 392
           PLRG  G W+    QR     +NT
Sbjct: 196 PLRGETGNWVQHRAQRNRTNNNNT 219


>AJ001042-1|CAA04496.1|  395|Anopheles gambiae putative gram
           negative bacteria bindingprotein protein.
          Length = 395

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +1

Query: 412 LFFVPKGGATFPWPPGGEI-LTQKRG 486
           ++ +PK  A   WP  GE+ L + RG
Sbjct: 194 IWLLPKRNAYGTWPASGEMDLMESRG 219


>AF081533-1|AAD29854.1|  395|Anopheles gambiae putative gram
           negative bacteria bindingprotein protein.
          Length = 395

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +1

Query: 412 LFFVPKGGATFPWPPGGEI-LTQKRG 486
           ++ +PK  A   WP  GE+ L + RG
Sbjct: 194 IWLLPKRNAYGTWPASGEMDLMESRG 219


>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 22.2 bits (45), Expect = 10.0
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 68  YHYSLQCSTFPLTVPPAPVT 9
           YH    CST   T  P+P T
Sbjct: 254 YHTDSDCSTQDSTSAPSPAT 273


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 22.2 bits (45), Expect = 10.0
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 68  YHYSLQCSTFPLTVPPAPVT 9
           YH    CST   T  P+P T
Sbjct: 254 YHTDSDCSTQDSTSAPSPAT 273


>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
            channel alpha1 subunit protein.
          Length = 1893

 Score = 22.2 bits (45), Expect = 10.0
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 470  KISPPGGQGKVAP 432
            KISPP G GK+ P
Sbjct: 1472 KISPPLGFGKLCP 1484


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 544,122
Number of Sequences: 2352
Number of extensions: 10891
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 43977336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)