Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1076
         (496 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81462-3|CAB03842.2| 1034|Caenorhabditis elegans Hypothetical pr...    28   3.2  
Z73423-2|CAA97774.1|  290|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AF043698-2|AAB97559.3|  700|Caenorhabditis elegans Hypothetical ...    27   7.5  
AF022972-2|AAC48242.1|  346|Caenorhabditis elegans Seven tm rece...    27   9.9  

>Z81462-3|CAB03842.2| 1034|Caenorhabditis elegans Hypothetical
           protein C04H5.3 protein.
          Length = 1034

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 145 RVVLSEFVYVTSIYTLYKKITLVSNLFPPFFIYSNFLL 258
           RV+L  F     + T+++  T ++N+  P FIY N L+
Sbjct: 222 RVILPIFSSTRDLSTVFRNATWLANMASPEFIYINPLI 259


>Z73423-2|CAA97774.1|  290|Caenorhabditis elegans Hypothetical
           protein C03A3.3 protein.
          Length = 290

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 139 VIRVVLSEFVYVTSIYTLYKKITLVSNLFPPFFIYSNFLLALLANKH-SVHLTV 297
           +++ V S+ V V   Y+  K  T  +N  P F +Y  FLLA++A  H   HL +
Sbjct: 202 ILKFVKSQDVEVR--YSASKNDT-DNNCLPTFKLYHRFLLAVIAGTHVGTHLRI 252


>AF043698-2|AAB97559.3|  700|Caenorhabditis elegans Hypothetical
           protein C54G6.2 protein.
          Length = 700

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -3

Query: 494 PPPPLFWVKISPPGGQGKVAPPFGTKKRP 408
           PPPP++ V+++    + +++ P G ++ P
Sbjct: 138 PPPPIYAVRLTSDSWENQMSRPSGRRRLP 166


>AF022972-2|AAC48242.1|  346|Caenorhabditis elegans Seven tm
           receptor protein 112 protein.
          Length = 346

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +3

Query: 324 GQTIGPDVILQSMNFSFIFVYFCVFE-IKRPFLCTERGSHLPLAPRRGNFNPKKG 485
           G+T+G    L S  FSF  +++ + E I RP +  E  +   ++ +R +++ + G
Sbjct: 36  GKTLGTYKYLMSF-FSFFSIFYAIVESILRPIMHIENTTFFLISRKRFDYSTRLG 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,787,138
Number of Sequences: 27780
Number of extensions: 253813
Number of successful extensions: 697
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)