Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1076
         (496 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.1  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   5.4  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   5.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   5.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.2  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +3

Query: 9   GDRCWWHC 32
           G++C WHC
Sbjct: 602 GEQCCWHC 609


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 181 IYTLYKKITLVSNLFPPFFI 240
           ++T YKK+ +  N+   +FI
Sbjct: 104 LWTSYKKVFMKDNILRQYFI 123


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 181 IYTLYKKITLVSNLFPPFFI 240
           ++T YKK+ +  N+   +FI
Sbjct: 87  LWTSYKKVFMKDNILRQYFI 106


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 192 QSINASYVYKLTQHNAYNWF 133
           QSI  S   +LT +  YNWF
Sbjct: 515 QSIIESPDKQLTLNEIYNWF 534


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -3

Query: 494 PPPPLFW 474
           PPPPL W
Sbjct: 338 PPPPLVW 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,840
Number of Sequences: 438
Number of extensions: 3206
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)