Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1076
         (496 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73590.1 68414.m08519 auxin efflux carrier protein, putative ...    28   3.0  
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative...    28   4.0  
At3g28050.1 68416.m03501 nodulin MtN21 family protein similar to...    28   4.0  
At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR...    27   6.9  
At1g22620.1 68414.m02824 phosphoinositide phosphatase family pro...    27   6.9  
At1g13970.1 68414.m01645 expressed protein                             27   6.9  
At5g07770.1 68418.m00889 formin homology 2 domain-containing pro...    27   9.2  

>At1g73590.1 68414.m08519 auxin efflux carrier protein, putative
           (PIN1) identical to putative auxin efflux carrier
           protein; AtPIN1 [Arabidopsis thaliana] GI:4151319;
           contains Pfam profile PF03547: Auxin Efflux Carrier
          Length = 622

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 432 GSHLPLAPRRGNFNPKKGGGG 494
           G+H P AP  G F+P  GGGG
Sbjct: 325 GAHYP-APNPGMFSPNTGGGG 344


>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           GI:7673355 from [Nicotiana tabacum]; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 620

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 494 PPPPLFWVKISPPGGQGKVAPPFGTKKRPFYFKYTKIDKNK 372
           PP  +F V +     QGK  P +G +  P   ++ KI+K K
Sbjct: 52  PPAFIFSVMVKS-NSQGKRNPQYGLEANPILKRHKKINKKK 91


>At3g28050.1 68416.m03501 nodulin MtN21 family protein similar to
           MtN21 [Medicago truncatula] GI:2598575; contains Pfam
           profile PF00892: Integral membrane protein
          Length = 367

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +1

Query: 136 PVIRVVLSEFVYVTSIYTLYKKITLVSNLFPPFFIYSNFLLALL 267
           PV  +V+ E   V  + TL+K  TL    F  F +YS  L ALL
Sbjct: 12  PVTALVIMECANV-GLNTLFKAATLKGMSFHVFIVYSYGLAALL 54


>At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1544

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +1

Query: 112  IELQ*CGEPVIRVVLSEFVYVTSIYTLYKKITLVSNLFPPFFIYSNFLLALLANKHSVHL 291
            +EL+     +++ +   F  + S++ LY K TLVS L   F   SN ++  +  K    +
Sbjct: 1138 VELRMSNCKMLKRLPESFGDLKSLHRLYMKETLVSELPESFGNLSNLMVLEMLKKPLFRI 1197

Query: 292  TVSGYP 309
            + S  P
Sbjct: 1198 SESNVP 1203


>At1g22620.1 68414.m02824 phosphoinositide phosphatase family
           protein contains similarity to phosphoinositide
           phosphatase SAC1 [Rattus norvegicus]
           gi|11095248|gb|AAG29810; contains Pfam domain, PF02383:
           SacI homology domain; identical to cDNA SAC domain
           protein 1 (SAC1)  SAC1-FRA7 allele, GI:31415718
          Length = 912

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 267 GKQALGPSDSEWVSNELGMGQTIGPDVILQSM 362
           GK AL   DS++  +  G+G  I PD+ +QS+
Sbjct: 632 GKPALWELDSDYYLHVSGIGDDIFPDIGVQSI 663


>At1g13970.1 68414.m01645 expressed protein
          Length = 504

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 407 FYFKYTKIDKNKTEIHGLQNDVRADR 330
           FY  Y KID NK E +  +N+V   R
Sbjct: 141 FYESYLKIDGNKGETYSSKNEVSIKR 166


>At5g07770.1 68418.m00889 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 722

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 494 PPPPLFWVKISPPGGQGKVAPP 429
           PPPP+     SPP   G+V PP
Sbjct: 27  PPPPMRRSAPSPPPMSGRVPPP 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,053,542
Number of Sequences: 28952
Number of extensions: 232695
Number of successful extensions: 696
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)