Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1075
(422 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 137 8e-34
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 73 1e-14
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 71 6e-14
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 69 3e-13
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 66 3e-12
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 65 4e-12
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 65 4e-12
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 64 1e-11
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 61 6e-11
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 60 1e-10
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 58 4e-10
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 54 7e-09
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 51 9e-08
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 40 2e-04
SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta... 28 0.69
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 1.6
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 1.6
SPAC222.03c |tim10||Tim9-Tim10 complex subunit Tim10|Schizosacch... 25 3.7
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 4.8
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 24 8.5
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 137 bits (331), Expect = 8e-34
Identities = 58/67 (86%), Positives = 62/67 (92%)
Frame = +2
Query: 50 MALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDY 229
MALKRINREL DLG+DPP+ CSAGP G+DLFHWQATIMGP DSPY GGVFFL+IHFPTDY
Sbjct: 1 MALKRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDY 60
Query: 230 PFKPPKV 250
PFKPPKV
Sbjct: 61 PFKPPKV 67
Score = 120 bits (290), Expect = 7e-29
Identities = 58/73 (79%), Positives = 60/73 (82%)
Frame = +1
Query: 196 FLPYHTFPYRLPFQTTKSCITTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSL 375
FL H FP PF+ K TTRIYHPNINSNGSICLDILR QWSPALTISKVLLSICSL
Sbjct: 51 FLSIH-FPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSL 109
Query: 376 LCDPNPDDPLVPK 414
L DPNPDDPLVP+
Sbjct: 110 LTDPNPDDPLVPE 122
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 73.3 bits (172), Expect = 1e-14
Identities = 32/63 (50%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Frame = +1
Query: 217 PYRLPFQTTKSCITTRIYHPNINSN-GSICLDILRAQWSPALTISKVLLSICSLLCDPNP 393
P PF+ K T+IYHPN++S G+ICLDIL+ QWSP T+ L+S+ SLLC P P
Sbjct: 60 PIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEP 119
Query: 394 DDP 402
+P
Sbjct: 120 SNP 122
Score = 59.7 bits (138), Expect = 2e-10
Identities = 25/64 (39%), Positives = 37/64 (57%)
Frame = +2
Query: 59 KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFK 238
+RI +EL D+ +D A +D+ H + GP +PY+GG F + I P DYPF+
Sbjct: 7 RRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFR 66
Query: 239 PPKV 250
PPK+
Sbjct: 67 PPKM 70
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 71.3 bits (167), Expect = 6e-14
Identities = 34/66 (51%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Frame = +1
Query: 214 FPYRLPFQTTKSCITTRIYHPNINSNGSICLDILRAQ-WSPALTISKVLLSICSLLCDPN 390
FP PFQ TTRIYHPN +S G++CL IL+ Q + P++ + VL I LL +PN
Sbjct: 62 FPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPN 121
Query: 391 PDDPLV 408
PDDPLV
Sbjct: 122 PDDPLV 127
Score = 64.9 bits (151), Expect = 5e-12
Identities = 27/69 (39%), Positives = 38/69 (55%)
Frame = +2
Query: 44 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 223
S + +R+ +E DL P ++LFHW T +GP DS Y GG F ++ FP
Sbjct: 5 SPSSSRRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPL 64
Query: 224 DYPFKPPKV 250
DYPF+PP +
Sbjct: 65 DYPFQPPTI 73
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 68.9 bits (161), Expect = 3e-13
Identities = 32/63 (50%), Positives = 38/63 (60%)
Frame = +1
Query: 217 PYRLPFQTTKSCITTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNPD 396
P P T+IYHPN++ G ICL L+ WSPAL I VLLSI +L+ PNPD
Sbjct: 58 PDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPD 117
Query: 397 DPL 405
DPL
Sbjct: 118 DPL 120
Score = 61.7 bits (143), Expect = 5e-11
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = +2
Query: 50 MAL-KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTD 226
MAL KRI +E++ L RDPP A P ++L +++ T+ GP S Y+GG F L + P +
Sbjct: 1 MALPKRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDE 60
Query: 227 YPFKPPKV 250
YP PP V
Sbjct: 61 YPMMPPNV 68
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 65.7 bits (153), Expect = 3e-12
Identities = 28/69 (40%), Positives = 42/69 (60%)
Frame = +2
Query: 44 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 223
S A +R+ R+ + + +DPPA SA P +++ W A I+GP D+P++ G F L + F
Sbjct: 2 STTARRRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDE 61
Query: 224 DYPFKPPKV 250
YP KPP V
Sbjct: 62 QYPNKPPLV 70
Score = 58.4 bits (135), Expect = 4e-10
Identities = 28/80 (35%), Positives = 44/80 (55%)
Frame = +1
Query: 163 GPS*QSLSRRSFLPYHTFPYRLPFQTTKSCITTRIYHPNINSNGSICLDILRAQWSPALT 342
GP+ +F +F + P + + ++HPN+ +NG +CLDIL+ +WSP
Sbjct: 42 GPADTPFEDGTFKLVLSFDEQYPNKPPLVKFVSTMFHPNVYANGELCLDILQNRWSPTYD 101
Query: 343 ISKVLLSICSLLCDPNPDDP 402
++ +L SI SLL DPN P
Sbjct: 102 VAAILTSIQSLLNDPNNASP 121
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 65.3 bits (152), Expect = 4e-12
Identities = 29/69 (42%), Positives = 41/69 (59%)
Frame = +2
Query: 44 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 223
S+ A KR+ +E L ++P A P E++ W I GP D+PY+GG + T+ FP
Sbjct: 3 SKGAYKRLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPP 62
Query: 224 DYPFKPPKV 250
DYPFKPP +
Sbjct: 63 DYPFKPPAI 71
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 65.3 bits (152), Expect = 4e-12
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = +2
Query: 50 MALKRINRELQDLGRDPPAQCSAGPHGED-LFHWQATIMGPVDSPYQGGVFFLTIHFPTD 226
MAL+R+ +E ++L + P +AGP ED F W I GP +P++GG++ T+ FP+D
Sbjct: 5 MALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSD 64
Query: 227 YPFKPP 244
YP PP
Sbjct: 65 YPLGPP 70
Score = 44.4 bits (100), Expect = 7e-06
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Frame = +1
Query: 214 FPYRLPFQTTKSCITTRIYHPNINSNGSICLDILRA-------------QWSPALTISKV 354
FP P +HPN+ +G++C+ IL A +WSP ++ K+
Sbjct: 61 FPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKI 120
Query: 355 LLSICSLLCDPNPD 396
LLS+ S+L +PN +
Sbjct: 121 LLSVMSMLAEPNDE 134
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 63.7 bits (148), Expect = 1e-11
Identities = 30/81 (37%), Positives = 45/81 (55%)
Frame = +1
Query: 163 GPS*QSLSRRSFLPYHTFPYRLPFQTTKSCITTRIYHPNINSNGSICLDILRAQWSPALT 342
GPS F +FP P+ T+ ++HPN++ +G+ICLDIL+ +WS
Sbjct: 67 GPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYN 126
Query: 343 ISKVLLSICSLLCDPNPDDPL 405
+ +LLS+ SLL +PN PL
Sbjct: 127 VQTILLSLQSLLGEPNNASPL 147
Score = 53.6 bits (123), Expect = 1e-08
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +2
Query: 59 KRINRELQDLGRDPPAQCSAGPHGE-DLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPF 235
KR+ EL L SA P + +L HW TI GP D+ Y+G F +++ FP +YP+
Sbjct: 31 KRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPY 90
Query: 236 KPPKV 250
PP +
Sbjct: 91 SPPTI 95
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 61.3 bits (142), Expect = 6e-11
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Frame = +2
Query: 65 INRELQDLGRDPPAQCSAG-PHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKP 241
+ ++L+++ ++PP S G + +F W+ I+GP D+ Y+GG F T+ FP DYP P
Sbjct: 10 LRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMP 69
Query: 242 PKV 250
PK+
Sbjct: 70 PKM 72
Score = 48.4 bits (110), Expect = 5e-07
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 13/77 (16%)
Frame = +1
Query: 211 TFPYRLPFQTTKSCITTRIYHPNINSNGSICLDILR-------------AQWSPALTISK 351
+FP P K TT I+HPN++ NG +C+ IL +W P +
Sbjct: 60 SFPQDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPET 119
Query: 352 VLLSICSLLCDPNPDDP 402
+L+S+ S+L PN + P
Sbjct: 120 ILISVISMLSSPNDESP 136
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 60.5 bits (140), Expect = 1e-10
Identities = 24/59 (40%), Positives = 36/59 (61%)
Frame = +1
Query: 229 PFQTTKSCITTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPL 405
P K +IYHPNI+ G++CL+ILR W+P L ++ +L+ + L PN +DPL
Sbjct: 81 PHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNLNSILVGLQFLFLSPNAEDPL 139
Score = 28.7 bits (61), Expect = 0.39
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 167 PVDSPYQGGVFFLTIHFPTDYPFKPPKV 250
P + Y+GG F I +YP PPKV
Sbjct: 60 PDEGYYKGGKFKFRIQIDDNYPHDPPKV 87
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 58.4 bits (135), Expect = 4e-10
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +1
Query: 214 FPYRLPFQTTKSCITTRIYHPNINSNGSICLDILRAQ--WSPALTISKVLLSICSLLCDP 387
FP P + K T ++HPN+ +G++CL IL + W PA+TI ++LL I LL DP
Sbjct: 64 FPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDP 123
Query: 388 NPDDP 402
N P
Sbjct: 124 NIASP 128
Score = 49.2 bits (112), Expect = 3e-07
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +2
Query: 44 SQMALKRINRELQDLGRDPP-----AQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLT 208
S + R+ E + RD P C + G DL +W+ I G + ++GG++ LT
Sbjct: 2 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLT 61
Query: 209 IHFPTDYPFKPPK 247
+ FP +YP +PPK
Sbjct: 62 MAFPEEYPTRPPK 74
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 54.4 bits (125), Expect = 7e-09
Identities = 21/42 (50%), Positives = 27/42 (64%)
Frame = +2
Query: 134 DLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVASQ 259
D+FHW+A I GP ++PY+GG + L IH YP PP V Q
Sbjct: 33 DMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQ 74
Score = 53.2 bits (122), Expect = 2e-08
Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Frame = +1
Query: 259 TRIYHPNIN-SNGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPL 405
T+I HPNI+ +NG +C+DIL+ WSPA ++ L+I SLL + + PL
Sbjct: 75 TKIVHPNISWTNGEVCMDILKTHWSPAWSLQSACLAIISLLSNYDASSPL 124
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 50.8 bits (116), Expect = 9e-08
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Frame = +1
Query: 160 YGPS*QSLSRRSFLPYHTFPYRLPFQTTKSCITTRIYHPNINS-NGSICLDILRAQWSPA 336
+GPS S + + P P+++ RI+HPNI+ +GS+CLD++ WSP
Sbjct: 37 HGPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPM 96
Query: 337 LTISKVL-LSICSLLCDPNPDDPL 405
+ + + + LL PN DPL
Sbjct: 97 FDMINIFEVFLPQLLRYPNASDPL 120
Score = 37.1 bits (82), Expect = 0.001
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +2
Query: 164 GPVDSPYQGGVFFLTIHFPTDYPFKPPKV 250
GP ++PY GG++ + + P++YP+K P +
Sbjct: 38 GPSETPYSGGIWKVHVELPSEYPWKSPSI 66
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 39.5 bits (88), Expect = 2e-04
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +2
Query: 104 AQCSAGPHGED---LFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKV 250
+ CS G D L W ATI+GP S ++ ++ L IH +YP PP V
Sbjct: 24 SSCSYGLTNADDITLSDWNATILGPAHSVHENRIYSLKIHCDANYPDAPPIV 75
>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
Taf4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 27.9 bits (59), Expect = 0.69
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +2
Query: 41 NSQMALKRINRELQDLGRDPPAQCSAG---PHGEDLFHWQATIMGPVDSPYQGGVF 199
+S A K I+ + Q+ + A AG P G + W AT M P+ +P GG F
Sbjct: 246 SSSAAAKNISEDAQNRMTNATASIMAGSALPSGGKKYSWMATDMTPM-TPAVGGGF 300
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 26.6 bits (56), Expect = 1.6
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +3
Query: 105 HNVRQAHTVKIC---SIGKPQLWAQLTVLIKEEFSSLPYISLQTTLSNHQ 245
H V +T C ++ P LWA L + F Y L+T N+Q
Sbjct: 406 HTVFSGYTTVWCPQNAVFVPGLWANLATRYRASFMLTDYAGLKTIAYNYQ 455
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.6 bits (56), Expect = 1.6
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 221 TDYPFKPPKVASQHVFIILT*TVMVPSVLTFCVHSGHQRSPY 346
TD PP +S F +T T M+PS +F +G SPY
Sbjct: 184 TDIVTLPPPASSTSSFSTITNTSMIPSSSSFTTTTG---SPY 222
>SPAC222.03c |tim10||Tim9-Tim10 complex subunit
Tim10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 25.4 bits (53), Expect = 3.7
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +1
Query: 223 RLPFQTTKSCITTRIYHPNINSNGSICLD 309
RL K CI+ + Y ++ S+C+D
Sbjct: 34 RLVMTCHKKCISPKYYEADLTKGESVCID 62
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 4.8
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 128 RVGLPNIVLVDPCPDL 81
RV L +IV ++PCPD+
Sbjct: 113 RVRLGDIVTINPCPDI 128
>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 343
Score = 24.2 bits (50), Expect = 8.5
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = +2
Query: 68 NRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPK 247
N E P A S+ P+G + I GP+ GG+ L I F FK K
Sbjct: 68 NPEPTSASTPPSASASSLPNGAQKHNHTGVIAGPIVG-VLGGLIVLVIIFYCLRHFKRKK 126
Query: 248 -VASQHVF 268
+A Q F
Sbjct: 127 FLAEQQEF 134
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,030,096
Number of Sequences: 5004
Number of extensions: 45670
Number of successful extensions: 145
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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