Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1075
(422 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 143 4e-35
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 143 4e-35
AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical... 101 2e-22
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 76 9e-15
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 69 1e-12
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 67 4e-12
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 64 3e-11
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 64 5e-11
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 64 5e-11
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 60 8e-10
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 59 1e-09
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 57 5e-09
U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin conju... 57 6e-09
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 54 3e-08
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 50 7e-07
AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin con... 47 5e-06
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 47 6e-06
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 47 6e-06
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 46 1e-05
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 45 3e-05
Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical pr... 42 2e-04
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 38 0.004
U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin conju... 38 0.004
U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2 (c... 37 0.005
Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical pr... 36 0.009
Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical pr... 36 0.012
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr... 30 0.59
U40948-1|AAA81727.1| 730|Caenorhabditis elegans Gliotactin (dro... 29 1.0
AF100307-11|AAC68929.1| 304|Caenorhabditis elegans Hypothetical... 29 1.4
AF016665-9|AAC71177.1| 363|Caenorhabditis elegans Nuclear hormo... 28 2.4
Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical pr... 28 3.2
Z81461-6|CAB03837.1| 272|Caenorhabditis elegans Hypothetical pr... 28 3.2
L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient ... 27 4.2
L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient ... 27 4.2
AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologou... 27 4.2
AL032648-8|CAI46618.1| 365|Caenorhabditis elegans Hypothetical ... 27 5.5
AL117206-7|CAE18041.2| 170|Caenorhabditis elegans Hypothetical ... 27 7.3
AF077530-1|AAC26266.1| 441|Caenorhabditis elegans Hypothetical ... 27 7.3
U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical p... 26 9.7
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 143 bits (347), Expect = 4e-35
Identities = 62/68 (91%), Positives = 65/68 (95%)
Frame = +2
Query: 50 MALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDY 229
MALKRI +ELQDLGRDPPAQCSAGP G+DLFHWQATIMGP +SPYQGGVFFLTIHFPTDY
Sbjct: 1 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDY 60
Query: 230 PFKPPKVA 253
PFKPPKVA
Sbjct: 61 PFKPPKVA 68
Score = 127 bits (306), Expect = 4e-30
Identities = 59/73 (80%), Positives = 62/73 (84%)
Frame = +1
Query: 196 FLPYHTFPYRLPFQTTKSCITTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSL 375
FL H FP PF+ K TTRIYHPNINSNGSICLDILR+QWSPALTISKVLLSICSL
Sbjct: 51 FLTIH-FPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSL 109
Query: 376 LCDPNPDDPLVPK 414
LCDPNPDDPLVP+
Sbjct: 110 LCDPNPDDPLVPE 122
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 143 bits (347), Expect = 4e-35
Identities = 62/68 (91%), Positives = 65/68 (95%)
Frame = +2
Query: 50 MALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDY 229
MALKRI +ELQDLGRDPPAQCSAGP G+DLFHWQATIMGP +SPYQGGVFFLTIHFPTDY
Sbjct: 1 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDY 60
Query: 230 PFKPPKVA 253
PFKPPKVA
Sbjct: 61 PFKPPKVA 68
Score = 127 bits (306), Expect = 4e-30
Identities = 59/73 (80%), Positives = 62/73 (84%)
Frame = +1
Query: 196 FLPYHTFPYRLPFQTTKSCITTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSL 375
FL H FP PF+ K TTRIYHPNINSNGSICLDILR+QWSPALTISKVLLSICSL
Sbjct: 51 FLTIH-FPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSL 109
Query: 376 LCDPNPDDPLVPK 414
LCDPNPDDPLVP+
Sbjct: 110 LCDPNPDDPLVPE 122
>AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical
protein F52C6.12 protein.
Length = 78
Score = 101 bits (242), Expect = 2e-22
Identities = 43/54 (79%), Positives = 48/54 (88%)
Frame = +2
Query: 50 MALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTI 211
MALKRI +EL DLGRDPPAQCS G G+DL+HWQATIMGP +SPYQGG+FFLTI
Sbjct: 1 MALKRIQKELHDLGRDPPAQCSTGSVGDDLYHWQATIMGPPESPYQGGIFFLTI 54
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 76.2 bits (179), Expect = 9e-15
Identities = 36/63 (57%), Positives = 42/63 (66%)
Frame = +1
Query: 217 PYRLPFQTTKSCITTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNPD 396
P P K T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNP+
Sbjct: 60 PEEYPMAAPKVRFMTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPE 119
Query: 397 DPL 405
DPL
Sbjct: 120 DPL 122
Score = 54.4 bits (125), Expect = 3e-08
Identities = 27/64 (42%), Positives = 35/64 (54%)
Frame = +2
Query: 59 KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFK 238
+RI +E Q L DP SA P + ++ I GP DSP+ GGVF L + P +YP
Sbjct: 7 RRIIKETQRLLADPVPGISANPDESNARYFHVMIAGPDDSPFAGGVFKLELFLPEEYPMA 66
Query: 239 PPKV 250
PKV
Sbjct: 67 APKV 70
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 68.9 bits (161), Expect = 1e-12
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Frame = +1
Query: 217 PYRLPFQTTKSCITTRIYHPNINSN-GSICLDILRAQWSPALTISKVLLSICSLLCDPNP 393
P + PF +T+I+HPN++S G ICLDIL+ QW+ +LT+ VLLSI +L+C P P
Sbjct: 63 PDQYPFSPPNVKFSTKIWHPNVSSQTGVICLDILKDQWAASLTLRTVLLSIQALMCTPEP 122
Query: 394 DDP 402
DP
Sbjct: 123 KDP 125
Score = 46.0 bits (104), Expect = 1e-05
Identities = 20/40 (50%), Positives = 24/40 (60%)
Frame = +2
Query: 131 EDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKV 250
E+L + I GP D+PY GG+F L I P YPF PP V
Sbjct: 34 ENLTEIKGHIRGPPDTPYAGGMFDLDIKIPDQYPFSPPNV 73
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 67.3 bits (157), Expect = 4e-12
Identities = 29/58 (50%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Frame = +1
Query: 232 FQTTKSCITTRIYHPNINSN-GSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDP 402
F+ ++ TRI+HPNI+S G+ICLDIL+ +W+ +LT+ VLLS+ ++LC P P DP
Sbjct: 97 FEYIQAKFVTRIWHPNISSQTGTICLDILKDKWTASLTLRTVLLSLQAMLCSPEPSDP 154
Score = 47.2 bits (107), Expect = 5e-06
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Frame = +2
Query: 44 SQMALKRINRELQDLGRDPPAQCSAGPHGE----DLFHWQATIMGPVDSPYQGGVFFLTI 211
S +AL R+ R+ +++ AG H E +L + I GP +PY GG F + +
Sbjct: 16 SNLALARVTRKCKEVANASDIT-EAGIHVEIKENNLMDIKGFIKGPEGTPYAGGTFEIKV 74
Query: 212 HFPTDYPFKPPKV 250
P YPF+PPKV
Sbjct: 75 DIPEHYPFEPPKV 87
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 64.5 bits (150), Expect = 3e-11
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Frame = +1
Query: 166 PS*QSLSRRSFLPYHTFPYRLPFQTTKSCITTRIYHPNINSNGSICLDILRAQ-WSPALT 342
P + ++ +F TFP PF+ K T+IYHPN++ G CL I+ A+ W PA
Sbjct: 41 PDKEPYNKGAFKVGITFPVDYPFKPPKVAFETKIYHPNVDEEGKFCLPIVTAENWKPATK 100
Query: 343 ISKVLLSICSLLCDPNPDDPL 405
+V++++ SL+ +P P P+
Sbjct: 101 TEQVMMALLSLINEPEPSHPI 121
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 63.7 bits (148), Expect = 5e-11
Identities = 32/96 (33%), Positives = 51/96 (53%)
Frame = +1
Query: 115 GRPTR*RSVPLASHNYGPS*QSLSRRSFLPYHTFPYRLPFQTTKSCITTRIYHPNINSNG 294
G PT + + +GP +F F P + ++++HPN+ ++G
Sbjct: 26 GAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADG 85
Query: 295 SICLDILRAQWSPALTISKVLLSICSLLCDPNPDDP 402
SICLDIL+ +WSP ++ +L SI SLL +PNP+ P
Sbjct: 86 SICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSP 121
Score = 63.3 bits (147), Expect = 7e-11
Identities = 25/64 (39%), Positives = 40/64 (62%)
Frame = +2
Query: 59 KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFK 238
+R+ R+ + L DPPA S P +++ W+A I GP ++P++ G F L++ F +YP K
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 239 PPKV 250
PP V
Sbjct: 67 PPTV 70
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 63.7 bits (148), Expect = 5e-11
Identities = 32/96 (33%), Positives = 51/96 (53%)
Frame = +1
Query: 115 GRPTR*RSVPLASHNYGPS*QSLSRRSFLPYHTFPYRLPFQTTKSCITTRIYHPNINSNG 294
G PT + + +GP +F F P + ++++HPN+ ++G
Sbjct: 26 GAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADG 85
Query: 295 SICLDILRAQWSPALTISKVLLSICSLLCDPNPDDP 402
SICLDIL+ +WSP ++ +L SI SLL +PNP+ P
Sbjct: 86 SICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSP 121
Score = 63.3 bits (147), Expect = 7e-11
Identities = 25/64 (39%), Positives = 40/64 (62%)
Frame = +2
Query: 59 KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFK 238
+R+ R+ + L DPPA S P +++ W+A I GP ++P++ G F L++ F +YP K
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 239 PPKV 250
PP V
Sbjct: 67 PPTV 70
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 59.7 bits (138), Expect = 8e-10
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = +2
Query: 44 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 223
S +AL+R+ ++ Q L ++P A P ++ W+ I+G +PY+GG++ + FP
Sbjct: 6 STVALQRLKKDYQRLLKEPVPFMKAAPLETNILEWRYIIIGAPKTPYEGGIYMGKLLFPK 65
Query: 224 DYPFKPPKV 250
D+PFKPP +
Sbjct: 66 DFPFKPPAI 74
Score = 27.9 bits (59), Expect = 3.2
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +1
Query: 214 FPYRLPFQTTKSCITTRIYHPNINSNGSICLDILRAQ---WSPALTISKVLLSICSLLCD 384
FP PF+ + T + +N +CL I W+PA T+S ++ + S + D
Sbjct: 63 FPKDFPFKPPAILMLTP--NGRFQTNTRLCLSISDYHPDTWNPAWTVSTIITGLMSFMND 120
Query: 385 PNP 393
P
Sbjct: 121 NQP 123
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 58.8 bits (136), Expect = 1e-09
Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +2
Query: 53 ALKRINRELQDLGRDPPAQCSAGPHGED-LFHWQATIMGPVDSPYQGGVFFLTIHFPTDY 229
ALKR+ E ++L PP A P ED F W+ I GP ++ + GVF I FP DY
Sbjct: 5 ALKRLMTEYKELTTRPPEGIIAAPIDEDNFFEWECLITGPEETCFANGVFPARITFPQDY 64
Query: 230 PFKPPKV 250
P PPK+
Sbjct: 65 PLSPPKM 71
Score = 57.2 bits (132), Expect = 5e-09
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 13/93 (13%)
Frame = +1
Query: 163 GPS*QSLSRRSFLPYHTFPYRLPFQTTKSCITTRIYHPNINSNGSICLDILRA------- 321
GP + F TFP P K T I+HPNI ++G +C+ IL A
Sbjct: 43 GPEETCFANGVFPARITFPQDYPLSPPKMRFTCGIFHPNIYADGRVCISILHAPGDDPTG 102
Query: 322 ------QWSPALTISKVLLSICSLLCDPNPDDP 402
+WSP +I K+LLS+ S+L +PN + P
Sbjct: 103 YELSNERWSPVQSIEKILLSVVSMLAEPNDESP 135
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 57.2 bits (132), Expect = 5e-09
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = +2
Query: 65 INRELQDLGRDPPAQCSAG-PHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKP 241
+ ++L D+ R P SAG D++ W+ ++GP D+ Y+GG F + FP DYP KP
Sbjct: 8 LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKP 67
Query: 242 PKV 250
PK+
Sbjct: 68 PKM 70
Score = 47.6 bits (108), Expect = 4e-06
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 13/76 (17%)
Frame = +1
Query: 214 FPYRLPFQTTKSCITTRIYHPNINSNGSICLDIL-------------RAQWSPALTISKV 354
FP P + K + I+HPNI+ G++C+ IL +W P T+ +
Sbjct: 59 FPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETI 118
Query: 355 LLSICSLLCDPNPDDP 402
LLS+ S+L DPN + P
Sbjct: 119 LLSVISMLTDPNFESP 134
>U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein6 protein.
Length = 314
Score = 56.8 bits (131), Expect = 6e-09
Identities = 27/79 (34%), Positives = 43/79 (54%)
Frame = +2
Query: 14 VESQYNST*NSQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGG 193
+ QYN+ ++R+ +E +L R P A P ++LF W TI G + + ++GG
Sbjct: 1 MSEQYNT---KNAGVRRLMKEAMEL-RQPTEMYHAQPMEDNLFEWHFTIRGTLGTDFEGG 56
Query: 194 VFFLTIHFPTDYPFKPPKV 250
++ I FP DYP KPP +
Sbjct: 57 IYHGRIIFPADYPMKPPNL 75
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 54.4 bits (125), Expect = 3e-08
Identities = 25/69 (36%), Positives = 39/69 (56%)
Frame = +2
Query: 44 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 223
S AL+ + EL++L P + + ++LF W I GP + YQGG F +I FP+
Sbjct: 8 SSGALRALTMELKNLQSQPVEGFTIDVNEDNLFVWTVGIYGPPKTLYQGGYFKASIRFPS 67
Query: 224 DYPFKPPKV 250
+YP+ PP +
Sbjct: 68 NYPYSPPSM 76
Score = 52.8 bits (121), Expect = 1e-07
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Frame = +1
Query: 160 YGPS*QSLSRRSFLPYHTFPYRLPFQTTKSCITTRIYHPNINSNGSICLDILRA------ 321
YGP F FP P+ TT+++HPN+ NG +C+ IL +
Sbjct: 47 YGPPKTLYQGGYFKASIRFPSNYPYSPPSMKFTTKVWHPNVYENGDLCISILHSPIDDPQ 106
Query: 322 -------QWSPALTISKVLLSICSLLCDPNPDDP 402
+W+P ++ +LLS+ SLL +PN P
Sbjct: 107 SGELACERWNPTQSVRTILLSVISLLNEPNTSSP 140
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 50.0 bits (114), Expect = 7e-07
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = +1
Query: 196 FLPYHTFPYRLPFQTTKSCIT--TRIYHPNINSNGSICLDILRAQWSPALTISKVLLSIC 369
F+ TF + PF + + T HP+I SNG ICL IL W+PAL++ V LSI
Sbjct: 55 FMLQFTFGPQYPFNSPEVMFVGETIPAHPHIYSNGHICLSILSDDWTPALSVQSVCLSIL 114
Query: 370 SLL 378
S+L
Sbjct: 115 SML 117
Score = 37.9 bits (84), Expect = 0.003
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = +2
Query: 44 SQMALKRINRELQDLGRDPPAQCSAG--PHGEDLFHWQATIMGPVDSPYQGGVFFLTIHF 217
S A +R+ +EL L + P DL W+ ++G + Y G VF L F
Sbjct: 2 SDAATRRLMKELAQLKSEAPEGLLVDNTSTSNDLKQWKIGVVGAEGTLYAGEVFMLQFTF 61
Query: 218 PTDYPFKPPKV 250
YPF P+V
Sbjct: 62 GPQYPFNSPEV 72
>AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein15 protein.
Length = 218
Score = 47.2 bits (107), Expect = 5e-06
Identities = 18/69 (26%), Positives = 38/69 (55%)
Frame = +2
Query: 44 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 223
S A++R+ ++ L +DP A P+ +++ W + G D+P+ GG ++ + F
Sbjct: 17 SSSAVRRLQKDYAKLMQDPVDGIKALPNEDNILEWHYCLRGSPDTPFYGGYYWGKVIFKE 76
Query: 224 DYPFKPPKV 250
++P+ PP +
Sbjct: 77 NFPWSPPAI 85
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 46.8 bits (106), Expect = 6e-06
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Frame = +1
Query: 265 IYHPNINSNGSICLDIL--RAQWSPALTISKVLLSICSLLCDPNPDDP 402
++HPN+ +G++CL +L W P+++I ++L+ I LL PN +DP
Sbjct: 81 LFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIEDP 128
Score = 38.3 bits (85), Expect = 0.002
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +2
Query: 134 DLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPK 247
+LF+W+ I G D+ ++GG++ + + F D+P PPK
Sbjct: 37 NLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPK 74
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 46.8 bits (106), Expect = 6e-06
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Frame = +1
Query: 265 IYHPNINSNGSICLDIL--RAQWSPALTISKVLLSICSLLCDPNPDDP 402
++HPN+ +G++CL +L W P+++I ++L+ I LL PN +DP
Sbjct: 81 LFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIEDP 128
Score = 38.3 bits (85), Expect = 0.002
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +2
Query: 134 DLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPK 247
+LF+W+ I G D+ ++GG++ + + F D+P PPK
Sbjct: 37 NLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPK 74
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 46.0 bits (104), Expect = 1e-05
Identities = 19/32 (59%), Positives = 21/32 (65%)
Frame = +2
Query: 158 IMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVA 253
I GP D+PY G+F I FPT YPF PPK A
Sbjct: 449 ISGPDDTPYANGLFEFDIFFPTGYPFSPPKCA 480
Score = 31.1 bits (67), Expect = 0.34
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 12/63 (19%)
Frame = +1
Query: 214 FPYRLPFQTTKSCITTR-----IYHPNINSNGSICLDIL-------RAQWSPALTISKVL 357
FP PF K T ++PN+ ++G ICL IL +W+P ++ +VL
Sbjct: 468 FPTGYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSILGTWEGRPEEKWNPYCSLMQVL 527
Query: 358 LSI 366
+SI
Sbjct: 528 VSI 530
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 44.8 bits (101), Expect = 3e-05
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Frame = +1
Query: 217 PYRLPFQTTKSCITTRIYHPNIN-SNGSICLDILRAQWSPALTISKVL-LSICSLLCDPN 390
P + PF++ +I+HPNI+ ++G++CLD++ W+ ++ + + LL PN
Sbjct: 59 PDKYPFKSPSIGFLNKIFHPNIDEASGTVCLDVINQAWTALYDLTNIFDTFLPQLLTYPN 118
Query: 391 PDDPL 405
DPL
Sbjct: 119 AADPL 123
>Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical
protein R09B3.4 protein.
Length = 180
Score = 41.5 bits (93), Expect = 2e-04
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Frame = +1
Query: 259 TRIYHPNINSNGSICLDILRAQ------WSPALTISKVLLSICSLLCD 384
T+++HPNIN +GSICL ILR W P ++ V+ + SL D
Sbjct: 98 TKVWHPNINEDGSICLSILRQNSLDQYGWRPTRNLTDVVHGLVSLFND 145
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 37.5 bits (83), Expect = 0.004
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +2
Query: 149 QATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKV 250
Q I G ++PY+GG+F L I YPFK P V
Sbjct: 382 QGIIKGVEETPYEGGIFELDIKIGESYPFKAPTV 415
>U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein22 protein.
Length = 182
Score = 37.5 bits (83), Expect = 0.004
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 158 IMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVASQ 259
I GP D+PY+ GVF + + FP +YP P++ Q
Sbjct: 35 IAGPADTPYETGVFEVDLTFPDNYPNALPQIKFQ 68
>U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2
(conjugating enzyme)variant protein 2 protein.
Length = 230
Score = 37.1 bits (82), Expect = 0.005
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +1
Query: 259 TRIYHPNINSNGSICLDILRAQ-WSPALTISKVLLSICSLLCDPN 390
T ++HPN++ GSI L +L + WS ++ K+L I +LL P+
Sbjct: 108 TPLHHPNVDLRGSIYLKMLEQEHWSSETSLKKLLREISNLLATPD 152
Score = 31.5 bits (68), Expect = 0.26
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 128 GEDLF-HWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPP 244
G D++ W T+ GP SP++GG + ++++F +P PP
Sbjct: 64 GADIWCSWICTVPGPRGSPWEGGEYEVSVNF-HKWPIIPP 102
>Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical
protein F39B2.2 protein.
Length = 139
Score = 36.3 bits (80), Expect = 0.009
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 137 LFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKV 250
L W A+I+GP +PY+ ++ L I +YP +PP V
Sbjct: 38 LTRWTASIIGPPRTPYESRIYNLQIQCGGNYPREPPTV 75
>Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical
protein F49E12.4 protein.
Length = 160
Score = 35.9 bits (79), Expect = 0.012
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +1
Query: 214 FPYRLPFQTTKSCITTRIYHPNINS-NGSICLD-ILRAQWSPALTISKVLLSICSLLCDP 387
+P++ P+ K C +YHPN++ +C +L+ W P T+ VLL++ LL +P
Sbjct: 72 YPFKPPY--LKFC--HNVYHPNVDPVTCELCSPMLLQENWKPETTMEDVLLNLIVLLNEP 127
Query: 388 NPDDPL 405
+ P+
Sbjct: 128 DLSRPV 133
Score = 29.1 bits (62), Expect = 1.4
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +2
Query: 56 LKRINRELQDLGRDPPAQCSAGPHGE---DLFHWQATIMGPVDSPYQGGVFFLTIHFPTD 226
L RI +E+ DL ++ E D+F ++ G + Y+ +F LT+ +
Sbjct: 15 LSRIRKEIADLAKNKRRFIKDFRKIEKCKDIFQFKIIGDGVL---YKNMIFTLTLDVNVE 71
Query: 227 YPFKPPKVASQH 262
YPFKPP + H
Sbjct: 72 YPFKPPYLKFCH 83
>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
F46C3.3 protein.
Length = 2557
Score = 30.3 bits (65), Expect = 0.59
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +2
Query: 227 YPFKPPKVASQHVFIILT*TVMVPSVLTFCVHSGHQRSPYPKCCSQSAHFYAIP 388
YP + P + Q+V +++T ++M PS++T + G Q + P+ HF +P
Sbjct: 1217 YPQQMPMM--QYVPVMMTSSMMTPSMMTPSMMPGQQIAMVPQQMMMQPHFSYVP 1268
>U40948-1|AAA81727.1| 730|Caenorhabditis elegans Gliotactin
(drosophila neuroligin-like) homolog protein 1 protein.
Length = 730
Score = 29.5 bits (63), Expect = 1.0
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +1
Query: 142 PLASHNYGPS*QSLSRRSFLPYHTFPYRLPFQTTKSCITTRIYHPNINSNGSICLDIL 315
P + NY S +S P+ PY PF + C+ I+ P+I+ N ++
Sbjct: 138 PYLAFNYAASCAQDVEKSPSPFVDHPY--PFMVDEDCLYLNIFSPDISKNAQTTYPVI 193
>AF100307-11|AAC68929.1| 304|Caenorhabditis elegans Hypothetical
protein T12B5.3 protein.
Length = 304
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -2
Query: 238 FERVVCREMYGKEENSSLIRTVNWA--HNCGLPMEQIF 131
FER+ C E + +N+ T W HNC +P+EQ+F
Sbjct: 185 FERLACLEQW---KNAKTFETP-WVLVHNCQIPIEQLF 218
>AF016665-9|AAC71177.1| 363|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 166 protein.
Length = 363
Score = 28.3 bits (60), Expect = 2.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 307 DILRAQWSPALTISKVLLSIC 369
D LR QW P ++ KVL+ C
Sbjct: 335 DALRKQWDPTMSFQKVLVESC 355
>Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical
protein F26H9.7 protein.
Length = 219
Score = 27.9 bits (59), Expect = 3.2
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 137 LFHWQATIMGPVDSPYQGGVFFLTIHF-PTDYPFKPPKVASQHVFI 271
LFH I GPV S Y+GG FF I+ P P+V H FI
Sbjct: 63 LFH--VIIDGPVGSIYEGGTFFADINIQPYQNHSLIPRVCF-HTFI 105
>Z81461-6|CAB03837.1| 272|Caenorhabditis elegans Hypothetical
protein C04F12.8 protein.
Length = 272
Score = 27.9 bits (59), Expect = 3.2
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +1
Query: 208 HTFPYRLPFQTTKSCITTRIYHPNINSNGSICLDILRAQWSP-ALTISKVLLSICSLLCD 384
H+ P + + + Y P+++S S+ LR +SP +L S + L+ L
Sbjct: 186 HSLPSAQSSASKQRAFSASTYRPSVSSASSLATSSLRRAYSPSSLPASSLALTTSYSLFS 245
Query: 385 PNP 393
P P
Sbjct: 246 PAP 248
>L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform b
protein.
Length = 1047
Score = 27.5 bits (58), Expect = 4.2
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 324 VVTSAHHIQSVALNLLTSMRSQPRRPFG 407
+V S+ HI +V +++ +M + RRP+G
Sbjct: 834 IVRSSSHIDAVKRDIMRTMSTTSRRPYG 861
>L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform a
protein.
Length = 1027
Score = 27.5 bits (58), Expect = 4.2
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 324 VVTSAHHIQSVALNLLTSMRSQPRRPFG 407
+V S+ HI +V +++ +M + RRP+G
Sbjct: 814 IVRSSSHIDAVKRDIMRTMSTTSRRPYG 841
>AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologous
cation channel proteinprotein.
Length = 1027
Score = 27.5 bits (58), Expect = 4.2
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 324 VVTSAHHIQSVALNLLTSMRSQPRRPFG 407
+V S+ HI +V +++ +M + RRP+G
Sbjct: 814 IVRSSSHIDAVKRDIMRTMSTTSRRPYG 841
>AL032648-8|CAI46618.1| 365|Caenorhabditis elegans Hypothetical
protein Y54G9A.10 protein.
Length = 365
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 110 IVLVDPCPDLVIPY*FFLTPFDYFML 33
IVLVD +LV+ Y FFL F +F +
Sbjct: 178 IVLVDQMFNLVVAYLFFLFYFSFFYM 203
>AL117206-7|CAE18041.2| 170|Caenorhabditis elegans Hypothetical
protein Y67A10A.10 protein.
Length = 170
Score = 26.6 bits (56), Expect = 7.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 172 NWAHNCGLPMEQIFTVWACRTL 107
NWA CG P+ +FT++ L
Sbjct: 83 NWAQRCGDPVNGLFTMYMAEKL 104
>AF077530-1|AAC26266.1| 441|Caenorhabditis elegans Hypothetical
protein C40D2.3 protein.
Length = 441
Score = 26.6 bits (56), Expect = 7.3
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 154 HNYGPS*QSLSRRSFLPYHTFPYRLPFQTTKSCITTRIYHPNI 282
H Y P QS S +SF+ H F R F + C + H N+
Sbjct: 134 HKYSPCSQSYSGKSFVLKHNFKNR-RFVEAERCFSDIEEHYNV 175
>U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical
protein C28H8.3 protein.
Length = 1714
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 159 LWAQLTVLIKEEFSSLPYISLQTTLSNHQKLH 254
+W QL +LI+ P+++L T+ N KLH
Sbjct: 926 IWEQLLLLIQ-----CPFLALSATIGNANKLH 952
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,544,926
Number of Sequences: 27780
Number of extensions: 272117
Number of successful extensions: 763
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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