Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1074
(402 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 27 0.82
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 1.4
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 3.3
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 3.3
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 3.3
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 3.3
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 3.3
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 3.3
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 3.3
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 3.3
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 3.3
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 3.3
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 3.3
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 25 4.4
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 4.4
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S... 25 5.8
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 24 7.7
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 27.5 bits (58), Expect = 0.82
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 234 VTLKQRTFIYH*TKNLFKNTQKVPSNP 314
+ ++ T IY +LFK Q PSNP
Sbjct: 67 IEVRSETHIYEPNDSLFKENQDFPSNP 93
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.6 bits (56), Expect = 1.4
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 273 KNLFKNTQKVPSNPLFRFVFKLRKY 347
K LFK V SN L ++FKLRK+
Sbjct: 3251 KQLFKEDFIVNSNGLKSYIFKLRKW 3275
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 3.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 161 DNSLNFINNSSTVVNDVYNYIHVGGYSQTKNIYLSLNE 274
DNS+NF+N S + +D N + + TK + L NE
Sbjct: 845 DNSINFVNQIS-ITDDFKNQVVTEYTNDTKLLNLLNNE 881
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 3.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 161 DNSLNFINNSSTVVNDVYNYIHVGGYSQTKNIYLSLNE 274
DNS+NF+N S + +D N + + TK + L NE
Sbjct: 845 DNSINFVNQIS-ITDDFKNQVVTEYTNDTKLLNLLNNE 881
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 3.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 161 DNSLNFINNSSTVVNDVYNYIHVGGYSQTKNIYLSLNE 274
DNS+NF+N S + +D N + + TK + L NE
Sbjct: 845 DNSINFVNQIS-ITDDFKNQVVTEYTNDTKLLNLLNNE 881
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 3.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 161 DNSLNFINNSSTVVNDVYNYIHVGGYSQTKNIYLSLNE 274
DNS+NF+N S + +D N + + TK + L NE
Sbjct: 845 DNSINFVNQIS-ITDDFKNQVVTEYTNDTKLLNLLNNE 881
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 3.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 161 DNSLNFINNSSTVVNDVYNYIHVGGYSQTKNIYLSLNE 274
DNS+NF+N S + +D N + + TK + L NE
Sbjct: 845 DNSINFVNQIS-ITDDFKNQVVTEYTNDTKLLNLLNNE 881
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 3.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 161 DNSLNFINNSSTVVNDVYNYIHVGGYSQTKNIYLSLNE 274
DNS+NF+N S + +D N + + TK + L NE
Sbjct: 845 DNSINFVNQIS-ITDDFKNQVVTEYTNDTKLLNLLNNE 881
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 3.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 161 DNSLNFINNSSTVVNDVYNYIHVGGYSQTKNIYLSLNE 274
DNS+NF+N S + +D N + + TK + L NE
Sbjct: 845 DNSINFVNQIS-ITDDFKNQVVTEYTNDTKLLNLLNNE 881
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 3.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 161 DNSLNFINNSSTVVNDVYNYIHVGGYSQTKNIYLSLNE 274
DNS+NF+N S + +D N + + TK + L NE
Sbjct: 845 DNSINFVNQIS-ITDDFKNQVVTEYTNDTKLLNLLNNE 881
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 3.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 161 DNSLNFINNSSTVVNDVYNYIHVGGYSQTKNIYLSLNE 274
DNS+NF+N S + +D N + + TK + L NE
Sbjct: 845 DNSINFVNQIS-ITDDFKNQVVTEYTNDTKLLNLLNNE 881
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 3.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 161 DNSLNFINNSSTVVNDVYNYIHVGGYSQTKNIYLSLNE 274
DNS+NF+N S + +D N + + TK + L NE
Sbjct: 845 DNSINFVNQIS-ITDDFKNQVVTEYTNDTKLLNLLNNE 881
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 3.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 161 DNSLNFINNSSTVVNDVYNYIHVGGYSQTKNIYLSLNE 274
DNS+NF+N S + +D N + + TK + L NE
Sbjct: 845 DNSINFVNQIS-ITDDFKNQVVTEYTNDTKLLNLLNNE 881
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 25.0 bits (52), Expect = 4.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -3
Query: 397 SVWFLIYSRESLNISTQYLRNLK 329
+ WF E N + YL+NLK
Sbjct: 939 NTWFRFSEHEDTNFTKSYLKNLK 961
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.0 bits (52), Expect = 4.4
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 167 SLNFINNSSTVV--NDVYNYIHVGGYSQTKNIYLSLNEKPV 283
SLN I++ S + NDV N IHV S+ +I + P+
Sbjct: 153 SLNKIHDPSRFIKDNDVENRIHVSSASKVASISNTSKPNPI 193
>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
L3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 326
Score = 24.6 bits (51), Expect = 5.8
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 164 NSLNFINNSSTVVNDVYNYIHVGGYSQTKNIYLSLNEKPV*KYSE 298
+SLN + + + YIH + Q + YL +N+ + K SE
Sbjct: 267 SSLNLAEQQAAYNSLISYYIHSPPFRQLPSDYLEVNDGKIPKASE 311
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 24.2 bits (50), Expect = 7.7
Identities = 12/54 (22%), Positives = 29/54 (53%)
Frame = +3
Query: 27 VHSSRKLNNTNHSLELIYYRISS*LLRQLRVIDTVAFFKNMFNIQIILLTSLII 188
+ +LN +N L L+ ISS L +I + + + ++Q++++ S+++
Sbjct: 352 IFGKARLNLSNFQLTLLGMGISSFALLGTVIIPYLTEYFQLNSLQVVMIISILL 405
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,491,235
Number of Sequences: 5004
Number of extensions: 26862
Number of successful extensions: 90
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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