Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1074
         (402 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20893| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-23)                 30   0.81 
SB_11649| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_39674| Best HMM Match : Recep_L_domain (HMM E-Value=7.1)            26   10.0 

>SB_20893| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-23)
          Length = 435

 Score = 29.9 bits (64), Expect = 0.81
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +1

Query: 232 WLLSNKEHLFIIERKTCLKILRRFHPTLCFVLFLNYVNIA 351
           WL ++  HLFI ER+  L  L R+ P L F  +  Y N A
Sbjct: 213 WLPTHLMHLFITERRDILVSLPRYLPFLLF--WFGYFNSA 250


>SB_11649| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 755

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 18/71 (25%), Positives = 36/71 (50%)
 Frame = +3

Query: 102 LRQLRVIDTVAFFKNMFNIQIILLTSLIIVVQL*MMYITTYMSVVTLKQRTFIYH*TKNL 281
           L+ +R++    FF+ ++ +Q+I+ T      +L ++ +   + VV     + IY+  KN+
Sbjct: 276 LQVIRLLRLFRFFRLLYGLQVIMHTLKASSYELFLLLLILLIPVVLFS--SIIYYVEKNI 333

Query: 282 FKNTQKVPSNP 314
              T K  S P
Sbjct: 334 DGKTTKFRSIP 344


>SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2671

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
 Frame = +1

Query: 256 LFIIERKTCLKILRRFHPT--LCFVL----FLNYVNIAS-KYLKTR--VNISRTRPI 399
           LFII     L IL  FHPT  +C++L    +L      S  +LKT   VN+  T P+
Sbjct: 609 LFIISLSLFLPILHLFHPTPAVCYLLQPWRYLTCTACVSILFLKTNRLVNVFYTEPV 665


>SB_39674| Best HMM Match : Recep_L_domain (HMM E-Value=7.1)
          Length = 390

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 120 IDTVAFFKNMFNIQIILLTSLIIVVQL*MMYITTYMSVVTL 242
           ++++ FF  + N+ +ILL S     +  + Y+ TY  VV +
Sbjct: 137 LESLRFFSRLRNVAVILLGSETCANEWFLPYLKTYGGVVNV 177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,212,804
Number of Sequences: 59808
Number of extensions: 171148
Number of successful extensions: 422
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)