Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1074
         (402 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42437-4|AAA83498.2|  349|Caenorhabditis elegans Hypothetical pr...    29   0.94 
Z82084-7|CAB04979.2|  499|Caenorhabditis elegans Hypothetical pr...    28   2.2  
Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical pr...    28   2.9  
AF045639-8|AAC02566.1|  649|Caenorhabditis elegans Hypothetical ...    28   2.9  
AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol 1,4,...    27   3.8  
AJ243181-1|CAB45862.1| 2836|Caenorhabditis elegans inositol 1,4,...    27   3.8  
AJ243180-1|CAB45861.1| 2892|Caenorhabditis elegans inositol 1,4,...    27   3.8  
AJ243179-1|CAB45860.1| 2846|Caenorhabditis elegans inositol 1,4,...    27   3.8  
AF168688-1|AAF05302.1| 2846|Caenorhabditis elegans inositol 1,4,...    27   3.8  
AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol trip...    27   3.8  
AF036702-3|AAK68366.1| 2846|Caenorhabditis elegans Inositol trip...    27   3.8  
AF036702-2|AAW30669.1| 2836|Caenorhabditis elegans Inositol trip...    27   3.8  
AF036702-1|AAW30668.1| 2892|Caenorhabditis elegans Inositol trip...    27   3.8  
Z75713-3|CAB54301.1|  419|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z75713-2|CAB00051.2|  422|Caenorhabditis elegans Hypothetical pr...    27   5.0  
X51321-1|CAA35704.1|  422|Caenorhabditis elegans hypothetical pr...    27   5.0  
Z69634-2|CAA93451.2|  926|Caenorhabditis elegans Hypothetical pr...    27   6.7  

>U42437-4|AAA83498.2|  349|Caenorhabditis elegans Hypothetical
           protein F30B5.7 protein.
          Length = 349

 Score = 29.5 bits (63), Expect = 0.94
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 3   FFYVLFVRVHSSRKLNNTNHSLELIYYRISS*LLRQLRV 119
           F YV F+ + +S K N+ NH  +L++  I   L+  ++V
Sbjct: 280 FIYVTFIEIMASEKSNDFNHLKQLLWIIIGFALVTTMQV 318


>Z82084-7|CAB04979.2|  499|Caenorhabditis elegans Hypothetical
           protein ZK1053.6 protein.
          Length = 499

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = +3

Query: 21  VRVHSSRKLNNTNHSLELIYYRISS*LLRQLRVIDTVAFFKNMFNIQIILLTSLII--VV 194
           + VH +  L     +  + YYR +S   R  R++   A    MF + +    S +I   V
Sbjct: 369 LEVHKTSDLGWRQRASPISYYRSASSESRTARLLLFTALPFQMFFVGLSTAMSFVIDEPV 428

Query: 195 QL*MMYITTYMSVVTLKQRTFIY 263
           +    +   Y  VV ++Q T +Y
Sbjct: 429 ETDFRFFIAYALVVLIQQSTILY 451


>Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical
           protein F45H11.3 protein.
          Length = 738

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 14/59 (23%), Positives = 27/59 (45%)
 Frame = +2

Query: 143 KYV*YTDNSLNFINNSSTVVNDVYNYIHVGGYSQTKNIYLSLNEKPV*KYSEGSIQPFV 319
           K+  Y    + + +N      DVYNY+      +T +++ S+N   V   + G +  F+
Sbjct: 41  KFTFYVRERMLYRSNVEVTYEDVYNYLATISNDETVSLHYSVNGLYVPITTTGQLHTFI 99


>AF045639-8|AAC02566.1|  649|Caenorhabditis elegans Hypothetical
           protein B0212.1 protein.
          Length = 649

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +1

Query: 256 LFIIERKTCLKILRRFHPTLCFVLFLNYVNIASKYLKTRVNISRTRPIN 402
           +F++   + L I  RFH ++CF      V  A  +L      S   PIN
Sbjct: 600 VFLVRSFSPLTIFYRFHSSVCFAEIWKNVYAAKTHLVHNSATSTATPIN 648


>AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol
            1,4,5-trisphosphate receptorprotein.
          Length = 2857

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 315  LFRFVFKLRKYCVEIFKDSREYIKNQTDK 401
            L R VF +   C  + KD+++Y+ N T++
Sbjct: 2341 LERVVFPINDICSYLTKDTKDYVYNNTER 2369


>AJ243181-1|CAB45862.1| 2836|Caenorhabditis elegans inositol
            1,4,5-trisphosphate receptorprotein.
          Length = 2836

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 315  LFRFVFKLRKYCVEIFKDSREYIKNQTDK 401
            L R VF +   C  + KD+++Y+ N T++
Sbjct: 2320 LERVVFPINDICSYLTKDTKDYVYNNTER 2348


>AJ243180-1|CAB45861.1| 2892|Caenorhabditis elegans inositol
            1,4,5-trisphosphate receptorprotein.
          Length = 2892

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 315  LFRFVFKLRKYCVEIFKDSREYIKNQTDK 401
            L R VF +   C  + KD+++Y+ N T++
Sbjct: 2376 LERVVFPINDICSYLTKDTKDYVYNNTER 2404


>AJ243179-1|CAB45860.1| 2846|Caenorhabditis elegans inositol
            1,4,5-trisphosphate receptorprotein.
          Length = 2846

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 315  LFRFVFKLRKYCVEIFKDSREYIKNQTDK 401
            L R VF +   C  + KD+++Y+ N T++
Sbjct: 2330 LERVVFPINDICSYLTKDTKDYVYNNTER 2358


>AF168688-1|AAF05302.1| 2846|Caenorhabditis elegans inositol
            1,4,5-trisphosphate receptorprotein.
          Length = 2846

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 315  LFRFVFKLRKYCVEIFKDSREYIKNQTDK 401
            L R VF +   C  + KD+++Y+ N T++
Sbjct: 2330 LERVVFPINDICSYLTKDTKDYVYNNTER 2358


>AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol
            triphosphate receptorprotein 1, isoform e protein.
          Length = 2857

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 315  LFRFVFKLRKYCVEIFKDSREYIKNQTDK 401
            L R VF +   C  + KD+++Y+ N T++
Sbjct: 2341 LERVVFPINDICSYLTKDTKDYVYNNTER 2369


>AF036702-3|AAK68366.1| 2846|Caenorhabditis elegans Inositol
            triphosphate receptorprotein 1, isoform f protein.
          Length = 2846

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 315  LFRFVFKLRKYCVEIFKDSREYIKNQTDK 401
            L R VF +   C  + KD+++Y+ N T++
Sbjct: 2330 LERVVFPINDICSYLTKDTKDYVYNNTER 2358


>AF036702-2|AAW30669.1| 2836|Caenorhabditis elegans Inositol
            triphosphate receptorprotein 1, isoform d protein.
          Length = 2836

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 315  LFRFVFKLRKYCVEIFKDSREYIKNQTDK 401
            L R VF +   C  + KD+++Y+ N T++
Sbjct: 2320 LERVVFPINDICSYLTKDTKDYVYNNTER 2348


>AF036702-1|AAW30668.1| 2892|Caenorhabditis elegans Inositol
            triphosphate receptorprotein 1, isoform a protein.
          Length = 2892

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 315  LFRFVFKLRKYCVEIFKDSREYIKNQTDK 401
            L R VF +   C  + KD+++Y+ N T++
Sbjct: 2376 LERVVFPINDICSYLTKDTKDYVYNNTER 2404


>Z75713-3|CAB54301.1|  419|Caenorhabditis elegans Hypothetical
           protein T01G9.2b protein.
          Length = 419

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 155 YTDNSLNFINNSSTV--VNDVYNYIHVGGYSQTKNIYL 262
           Y D   +  NN +T+  VN+ +   H G Y    NIY+
Sbjct: 106 YNDTIFSDPNNMATLDRVNEFFGSTHPGSYDDKHNIYV 143


>Z75713-2|CAB00051.2|  422|Caenorhabditis elegans Hypothetical
           protein T01G9.2a protein.
          Length = 422

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 155 YTDNSLNFINNSSTV--VNDVYNYIHVGGYSQTKNIYL 262
           Y D   +  NN +T+  VN+ +   H G Y    NIY+
Sbjct: 109 YNDTIFSDPNNMATLDRVNEFFGSTHPGSYDDKHNIYV 146


>X51321-1|CAA35704.1|  422|Caenorhabditis elegans hypothetical
           protein protein.
          Length = 422

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 155 YTDNSLNFINNSSTV--VNDVYNYIHVGGYSQTKNIYL 262
           Y D   +  NN +T+  VN+ +   H G Y    NIY+
Sbjct: 109 YNDTIFSDPNNMATLDRVNEFFGSTHPGSYDDKHNIYV 146


>Z69634-2|CAA93451.2|  926|Caenorhabditis elegans Hypothetical
           protein B0001.2 protein.
          Length = 926

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 273 KNLFKNTQKVPSNPLFRFVFKLRKYCVEIFKDSREYIKN 389
           KN+FKN +K+ S  L+  +       VE+F   + +  N
Sbjct: 727 KNVFKNVEKMESRHLYEVILDKDGKVVELFDCPQYFTSN 765


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,923,354
Number of Sequences: 27780
Number of extensions: 141412
Number of successful extensions: 390
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)