Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1073
         (501 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.            81   3e-17
AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...    40   6e-05
EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    23   7.7  

>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score = 80.6 bits (190), Expect = 3e-17
 Identities = 36/78 (46%), Positives = 48/78 (61%)
 Frame = +2

Query: 254 VLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 433
           VLRF    + E   STIG  F  +T+ ++  T+K +IWDTAGQER+ ++   YYRGA   
Sbjct: 41  VLRFVKGQFHEYQESTIGAAFLTQTLCIDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 100

Query: 434 IIVYDCTDQDSFNTVKQW 487
           I+VYD  + DSF   K W
Sbjct: 101 IVVYDIQNSDSFARAKTW 118



 Score = 26.6 bits (56), Expect = 0.47
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +3

Query: 207 FKLLLIGDSGVGKSCL 254
           FKL+L+G+S VGKS L
Sbjct: 25  FKLVLLGESAVGKSSL 40


>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score = 39.5 bits (88), Expect = 6e-05
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
 Frame = +2

Query: 254 VLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 433
           ++ +  D++   Y+ T   ++    V ++G  + L +WDTAGQE +  +    Y      
Sbjct: 23  LISYTTDSFPGEYVPTSFDNYSAPMV-VDGVQVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81

Query: 434 IIVYDCTDQDSF-NTVKQWF*E 496
           +I Y      SF N   +W+ E
Sbjct: 82  LICYSVASPSSFENVTSKWYPE 103



 Score = 22.6 bits (46), Expect = 7.7
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 210 KLLLIGDSGVGKSCL 254
           K +++GD  VGK+C+
Sbjct: 8   KCVVVGDGTVGKTCM 22


>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
           channel alpha1 subunit protein.
          Length = 1893

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 349 CLAI*VYSPNFKVHANSTDVAL 284
           C+A+ VY+P     +NST+ AL
Sbjct: 127 CVALAVYTPFPNSDSNSTNAAL 148


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 457,771
Number of Sequences: 2352
Number of extensions: 8041
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 44823054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)