Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1072
         (412 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5IA15 Cluster: Putative uncharacterized protein; n=1; ...    35   0.56 
UniRef50_A7H7M3 Cluster: DNA-formamidopyrimidine glycosylase; n=...    33   3.0  
UniRef50_Q609E7 Cluster: N-acetylmuramoyl-L-alanine amidase doma...    32   4.0  
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    31   6.9  
UniRef50_A7UAL0 Cluster: Ornithine decarboxylase antizyme; n=1; ...    31   6.9  

>UniRef50_A5IA15 Cluster: Putative uncharacterized protein; n=1;
           Legionella pneumophila str. Corby|Rep: Putative
           uncharacterized protein - Legionella pneumophila (strain
           Corby)
          Length = 255

 Score = 35.1 bits (77), Expect = 0.56
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = -1

Query: 331 EGSKVSV*LQRLPHPSNRNALLLHGRIGRAVVPTRADS 218
           +G K+S+ L+ L HP N    ++HGRIG   + T  DS
Sbjct: 30  DGGKISLRLENLLHPQNELIKIIHGRIGETAI-TLVDS 66


>UniRef50_A7H7M3 Cluster: DNA-formamidopyrimidine glycosylase; n=8;
           Bacteria|Rep: DNA-formamidopyrimidine glycosylase -
           Anaeromyxobacter sp. Fw109-5
          Length = 313

 Score = 32.7 bits (71), Expect = 3.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 381 VTGTHRHLQRKCATHLERVLRSQYSYNGCPTLQTE 277
           V G HR     C T ++R++R++   N CP  QTE
Sbjct: 235 VHGRHRQPCPVCGTAVQRIVRAENEVNYCPRCQTE 269


>UniRef50_Q609E7 Cluster: N-acetylmuramoyl-L-alanine amidase
           domain/peptidoglycan binding domain protein; n=1;
           Methylococcus capsulatus|Rep: N-acetylmuramoyl-L-alanine
           amidase domain/peptidoglycan binding domain protein -
           Methylococcus capsulatus
          Length = 617

 Score = 32.3 bits (70), Expect = 4.0
 Identities = 28/86 (32%), Positives = 36/86 (41%)
 Frame = +1

Query: 46  PSPPNDVAIYTSIGEEVAACGCPGADSKLWRLEIRSTISVY*XXXXXXXXXXXVGPLVSP 225
           P+P    A   S+ E    CG P  D+ L+R    + I V             +  L+S 
Sbjct: 249 PAPRAPAAAVVSLPETAVECGIPRIDA-LFRGHGGAAIGV---REPTGDAVGAIQDLLSG 304

Query: 226 HG*VPPPCLFCRGAVMRFGLKGGAAV 303
           HG +  PCL    A  RFG K  AAV
Sbjct: 305 HGHIGLPCLL-SAAYGRFGSKTAAAV 329


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 31.5 bits (68), Expect = 6.9
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = -2

Query: 240 WYLPVRTHKRSY 205
           WYLP RTHKRSY
Sbjct: 572 WYLPARTHKRSY 583


>UniRef50_A7UAL0 Cluster: Ornithine decarboxylase antizyme; n=1;
           Paracoccidioides brasiliensis|Rep: Ornithine
           decarboxylase antizyme - Paracoccidioides brasiliensis
          Length = 272

 Score = 31.5 bits (68), Expect = 6.9
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 330 RVLRSQYSYNGCPTLQTETHYCSTAE*AGRWYLPVRT-HK 214
           +VL S YS N C    +  HYC+T     +WY  V + HK
Sbjct: 26  QVLASCYSVNPCTGSLSSFHYCTTVGTGAQWYPEVPSGHK 65


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 455,248,059
Number of Sequences: 1657284
Number of extensions: 8521224
Number of successful extensions: 20404
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20403
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 18619342852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)