Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1072
         (412 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   1.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   3.6  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   4.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.2  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 50  DGSCH*IRNSHRC 12
           +G+C  I NSHRC
Sbjct: 158 NGTCEDIGNSHRC 170



 Score = 20.6 bits (41), Expect = 6.2
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 259 GRIGRAVVPT 230
           G +GRAVVPT
Sbjct: 461 GGLGRAVVPT 470


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 90  RGRGVWLSWSRQQTMEI 140
           RG+ VWL    +QT +I
Sbjct: 462 RGQDVWLGKGAEQTRQI 478


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 211 PLVSPHG*VPPP 246
           P V PH  VPPP
Sbjct: 12  PTVLPHQEVPPP 23


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = +3

Query: 69   HLHIDWRRGRGVWLSWSRQQT 131
            H+H DW      W  WS   T
Sbjct: 1030 HMHPDWTTKPSTW--WSSTTT 1048



 Score = 20.2 bits (40), Expect = 8.2
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = -2

Query: 159  DGAPYF*SP*FAVGSRTTTRRDLFSNRCVDG 67
            D A Y  +  F      T   D FSNRC  G
Sbjct: 949  DKAEYIKTKGFGGAVAWTIDLDDFSNRCCGG 979


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,561
Number of Sequences: 336
Number of extensions: 2102
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8963165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)