Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1072
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1610.02c |||mitochondrial ribosomal protein subunit L1|Schiz...    25   4.6  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    25   4.6  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    25   6.1  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    24   8.0  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    24   8.0  

>SPAC1610.02c |||mitochondrial ribosomal protein subunit
           L1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 253

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +1

Query: 208 GPLVSPHG*VPPP--CLFCRGAVMRFGLKGGAAVV 306
           G +  PH    PP  C+F +GA     LK GA  V
Sbjct: 86  GQIAFPHPFQEPPKICVFAKGAAADEALKLGATYV 120


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 161 EMVLLISNLHSLLSAPGQPHAATSSPIDV*MATSFGG 51
           + VL+ ++  S+  +P    A + SPID  +A  FGG
Sbjct: 109 QFVLVTTHKFSINESPYPIIAVSQSPIDKTIACGFGG 145


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -3

Query: 407 LHSPPGVKWLLEPIDIYN 354
           LH P  V WLL P DIY+
Sbjct: 238 LHDPNTVMWLLRP-DIYS 254


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 17  DGSYVFSDSYHHLQTM*PSTHRLEK 91
           +GSYV +D   H  T   S H L+K
Sbjct: 34  NGSYVETDDVKHTDTHHSSKHELKK 58


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 258 PWSSNAFRFEGWGSRCNYTETLEPSQGVWRIYVVDVYG 371
           P+  N+  F  W +        EP +GVW++ V D  G
Sbjct: 532 PYDENSKGFLDW-TFMTVQHWAEPPEGVWKLLVNDRSG 568


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,763,513
Number of Sequences: 5004
Number of extensions: 32085
Number of successful extensions: 71
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)