Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1072
         (412 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0451 + 5845249-5846133,5846220-5846509,5855590-5856060,585...    28   2.5  
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749...    27   4.4  
04_01_0552 + 7125735-7126424,7126473-7126911,7127694-7128031           27   5.8  
01_06_1749 - 39636951-39638102                                         27   5.8  
02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143...    27   7.7  

>04_01_0451 +
           5845249-5846133,5846220-5846509,5855590-5856060,
           5856898-5857063,5857100-5857498,5858031-5858075
          Length = 751

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 72  LHIDWRRGRGVWL--SWSRQQTMEIRNKEH 155
           L I+W   +GVW    ++ Q T E+ N +H
Sbjct: 462 LEIEWNEEKGVWFVKEFNNQHTHELANPDH 491


>02_05_1052 + 33770355-33773981,33774217-33774336,33774880-33774996,
            33775322-33775411,33775971-33776078,33776304-33776351
          Length = 1369

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 287  FKPKRITAPRQNRQGGGTYPCGLTRGPTKS 198
            F P+R+ +P +NR      PC  TR  + S
Sbjct: 1126 FTPRRMPSPSRNRPSTPVSPCSSTRSDSAS 1155


>04_01_0552 + 7125735-7126424,7126473-7126911,7127694-7128031
          Length = 488

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -3

Query: 311 IVTTAAPPFKPKRITAPRQNRQGGGTYPCGLTRGPTK 201
           +++T  PP  P R+ A       GG   CG  R  T+
Sbjct: 61  VLSTVPPPLAPFRVAAISDGFDSGGMAACGDAREYTR 97


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 314 SIVTTAAPPFKPKRITA 264
           S+ + AAPPF P RIT+
Sbjct: 165 SVASAAAPPFDPSRITS 181


>02_04_0056 +
           19313422-19313967,19314035-19314168,19314263-19314398,
           19314870-19314923,19314995-19315135,19315220-19315546,
           19315647-19315916,19316080-19316226,19316890-19317045,
           19317223-19317290,19318210-19318309,19318696-19318985,
           19319074-19319274,19319840-19319902,19320263-19320356,
           19320964-19321035,19321979-19322077,19322254-19322376
          Length = 1006

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -2

Query: 309 SYNGCPTLQTETHYCSTAE*AGRWYLPVRTH 217
           S  GC T Q  TH C  A  +G   LPV+ H
Sbjct: 468 SSKGCITTQHSTHICEEA--SGLGELPVQPH 496


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,075,163
Number of Sequences: 37544
Number of extensions: 260572
Number of successful extensions: 789
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)