Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1072
(412 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26007| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.65
SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_59362| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077) 27 6.0
SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38) 27 6.0
SB_15533| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024) 27 6.0
SB_49131| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_17313| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_31030| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_26007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1145
Score = 30.3 bits (65), Expect = 0.65
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 24 VTYLVTATITSKRCSHLHIDWRRGRGVWLSWSRQQTMEI 140
VTY V A I + S + W+ G W++W+ T+ I
Sbjct: 98 VTYGVAAKIYMESDSKILKTWKDGNKTWIAWTHSHTLVI 136
>SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1298
Score = 27.5 bits (58), Expect = 4.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -1
Query: 142 LISIVCCRLQDNHTPRPLLQ 83
++S +CC+L N P+PLL+
Sbjct: 1268 VLSFLCCKLWKNKEPQPLLE 1287
>SB_59362| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 49 SPPNDVAIYTSIGEEVAACGCPGADSK 129
+PP+ + SIG V CGC SK
Sbjct: 68 TPPSAMTFKQSIGNPVIGCGCSSTRSK 94
>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 27.1 bits (57), Expect = 6.0
Identities = 14/58 (24%), Positives = 21/58 (36%)
Frame = -2
Query: 378 TGTHRHLQRKCATHLERVLRSQYSYNGCPTLQTETHYCSTAE*AGRWYLPVRTHKRSY 205
T TH + TH ++ N C +T+ C + WY P +T Y
Sbjct: 300 TKTHANWCHPTTTHANWCYPTKTQANWCHPTKTQACLCHPTKTQANWYHPSKTQVNWY 357
>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
Length = 677
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 318 SQYSYNGCPTLQTETHYCSTAE*AGRWYLPVRT 220
S+ N C +T+ ++C T++ WY P +T
Sbjct: 185 SKTQANWCHPYKTQANWCHTSKIQSNWYHPNKT 217
>SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)
Length = 550
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 9 LAAMGVTYLVTATITSKRCSHLHID 83
L A+GVT+++ A +KR SH++ D
Sbjct: 416 LVALGVTHVLNAAQGTKRLSHVNTD 440
>SB_15533| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 771
Score = 27.1 bits (57), Expect = 6.0
Identities = 23/87 (26%), Positives = 34/87 (39%)
Frame = -3
Query: 320 GLSIVTTAAPPFKPKRITAPRQNRQGGGTYPCGLTRGPTKSYXXXXXXXX*YTEMVLLIS 141
G S AA P + + PR +R GGGT K Y+E ++
Sbjct: 143 GDSAARIAATPPGYRLLDHPRSDRNGGGTGILARDSLVVKKARAAIYDSFEYSEWTIVSG 202
Query: 140 NLHSLLSAPGQPHAATSSPIDV*MATS 60
+ L A +P ++S P+ V M S
Sbjct: 203 STRLRLLAIYRPPYSSSHPLTVSMFIS 229
>SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024)
Length = 180
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 318 SQYSYNGCPTLQTETHYCSTAE*AGRWYLPVRT 220
S+ N C +T+ ++C T++ WY P +T
Sbjct: 30 SKTQANWCHPYKTQANWCHTSKIQSNWYHPNKT 62
>SB_49131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1163
Score = 26.6 bits (56), Expect = 7.9
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -1
Query: 307 LQRLPHPSNRNALLLHGRIGRAVVPTRADSQEVL 206
LQR PHPS +LL GR ++ ++A+ QE +
Sbjct: 5 LQRKPHPSQMLGILLILLSGRFLI-SKAEKQEAI 37
>SB_17313| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 293
Score = 26.6 bits (56), Expect = 7.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 276 FRFEGWGSRCNYTETLEPSQGVWRIYVVD 362
+RF+ W + N TL +GVWR +V+
Sbjct: 142 YRFKKWTQKENIRPTLLRYRGVWRAALVE 170
>SB_31030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1009
Score = 26.6 bits (56), Expect = 7.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 276 FRFEGWGSRCNYTETLEPSQGVWRIYVVD 362
+RF+ W + N TL +GVWR +V+
Sbjct: 342 YRFKKWTQKENIRPTLLRYRGVWRAALVE 370
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,459,621
Number of Sequences: 59808
Number of extensions: 287946
Number of successful extensions: 950
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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