Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1072
         (412 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66500-6|CAA91309.1|  318|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U61948-2|AAB03143.2|  345|Caenorhabditis elegans Collagen protei...    26   9.2  
M25480-1|AAA27986.1|  326|Caenorhabditis elegans collagen protein.     26   9.2  
AF022985-9|AAB69960.1|  314|Caenorhabditis elegans Collagen prot...    26   9.2  

>Z66500-6|CAA91309.1|  318|Caenorhabditis elegans Hypothetical
           protein T05C12.8 protein.
          Length = 318

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 40  QLPSPPNDVAIYTSIGEEV 96
           QL SPP D  +++S+GE++
Sbjct: 179 QLTSPPADHGVFSSVGEKI 197


>Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical
           protein C07A9.10 protein.
          Length = 254

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 252 ILPWSSNAFRFEGWGSRCNYTETLEPSQGVWRIYVVDVY 368
           I PWS+ A   + W +    TET EP   +++  V  ++
Sbjct: 42  ITPWSTQAKDRKAWKAVIRTTETREPKNIIYKKQVTVLF 80


>U61948-2|AAB03143.2|  345|Caenorhabditis elegans Collagen protein
           14 protein.
          Length = 345

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 293 PPFKPKRITAPRQNRQGGGTYPCGLTRGP 207
           PP +P     P +N +GGG  P GL   P
Sbjct: 281 PPGQPGPAGPPGENGKGGGQGPSGLPGPP 309


>M25480-1|AAA27986.1|  326|Caenorhabditis elegans collagen protein.
          Length = 326

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 293 PPFKPKRITAPRQNRQGGGTYPCGLTRGP 207
           PP +P     P +N +GGG  P GL   P
Sbjct: 262 PPGQPGPAGPPGENGKGGGQGPSGLPGPP 290


>AF022985-9|AAB69960.1|  314|Caenorhabditis elegans Collagen protein
           141 protein.
          Length = 314

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = -3

Query: 302 TAAPPFKPKRITAPRQNRQGGGTYPCGLTRGPT 204
           T   P  P    AP Q+  GGG  P G T GPT
Sbjct: 151 TPGAPGAPGNAGAPGQDSFGGGPGPAGPT-GPT 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,236,296
Number of Sequences: 27780
Number of extensions: 194989
Number of successful extensions: 399
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)