Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1071
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   102   3e-23
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    95   3e-21
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    58   5e-10
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    52   3e-08
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    29   0.42 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.0  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   3.0  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    25   3.9  
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    25   5.2  
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac...    25   6.8  
SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch...    25   6.8  
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual        24   9.0  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    24   9.0  

>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  102 bits (244), Expect = 3e-23
 Identities = 44/63 (69%), Positives = 49/63 (77%)
 Frame = +3

Query: 69  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 248
           MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M  +      D  F+TFFSETG GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 249 HVP 257
           +VP
Sbjct: 61  YVP 63



 Score = 98.3 bits (234), Expect = 5e-22
 Identities = 40/51 (78%), Positives = 48/51 (94%)
 Frame = +2

Query: 257 RAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI 409
           R+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+
Sbjct: 64  RSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKEL 114


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 95.5 bits (227), Expect = 3e-21
 Identities = 37/51 (72%), Positives = 48/51 (94%)
 Frame = +2

Query: 257 RAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI 409
           R+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE+
Sbjct: 68  RSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEM 118



 Score = 95.1 bits (226), Expect = 4e-21
 Identities = 48/68 (70%), Positives = 50/68 (73%), Gaps = 5/68 (7%)
 Frame = +3

Query: 69  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 233
           MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG  PT+     K     +D F TFFSE
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59

Query: 234 TGAGKHVP 257
           TG GK VP
Sbjct: 60  TGQGKFVP 67


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 58.4 bits (135), Expect = 5e-10
 Identities = 25/51 (49%), Positives = 35/51 (68%)
 Frame = +2

Query: 257 RAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI 409
           RAV VDLEP  +D V++G +  LF P+ +I G+  A N +A+GHYT G E+
Sbjct: 62  RAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAEL 112



 Score = 44.4 bits (100), Expect = 8e-06
 Identities = 22/63 (34%), Positives = 30/63 (47%)
 Frame = +3

Query: 69  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 248
           MRE + +  GQ G Q+G A W     EHG+   G      T     +  N +F+E   GK
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58

Query: 249 HVP 257
           +VP
Sbjct: 59  YVP 61


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 52.4 bits (120), Expect = 3e-08
 Identities = 25/62 (40%), Positives = 37/62 (59%)
 Frame = +3

Query: 72  RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 251
           RE I++  GQ G QIG+  W+  CLEHGI PDG + +  T   G D  + FF ++   ++
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60

Query: 252 VP 257
           +P
Sbjct: 61  IP 62



 Score = 43.6 bits (98), Expect = 1e-05
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
 Frame = +2

Query: 257 RAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGH 388
           RA+ +DLEP VV+ + + TY  L++PE ++  K    A NN+A G+
Sbjct: 63  RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANGY 108


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 28.7 bits (61), Expect = 0.42
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -3

Query: 304 ADLINNSRFKIDEDSTGTCLPAPVSLKKVLKESSPPPM 191
           AD+IN SR+ ID  S  T     + L        P P+
Sbjct: 455 ADIINGSRYNIDRVSPNTAFSTNIPLSLPFANKEPQPI 492


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 148 STASSLMARCPQTRPSGVETILSTLSSARPELAST 252
           ST SSL +    ++PS   T  ST SSA P   S+
Sbjct: 173 STFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSS 207


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +2

Query: 167 WPDAHRQDHRGWRRFFQHFLQR 232
           W  A R D R  R  FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 58  LKSKCVSASLYTLAKPESRSVMPAGSFTAWSTASSLMARCP 180
           L+S        +L+ P SR++ P  S +  STASSL    P
Sbjct: 170 LRSSMPLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSP 210


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 122 ITDLDSGLANVYRDALTHFDLSF 54
           +T +D GLA  YRD  TH  + +
Sbjct: 146 VTMIDFGLAKKYRDFKTHVHIPY 168


>SPBC3H7.15 |hhp1||serine/threonine protein kinase
           Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 176 HLAIRLDAVLQAV-KLPAGITDLDSGLANVYRDALTHFDLSF 54
           H  I+ D  L  + K    +  +D GLA  YRD  TH  + +
Sbjct: 128 HRDIKPDNFLMGIGKRGNQVNIIDFGLAKKYRDHKTHLHIPY 169


>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 469

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
 Frame = -3

Query: 346 NKLFWMKQLSVCASADLINNSRFKI------DEDSTGTCLPAPVSLKKVLKESSPPPMVL 185
           N  F +  + +      + N RF+I      D +S  T +PA + ++ +  +S P P + 
Sbjct: 287 NLEFGLTPVEILGHKGNVENVRFQITDSIRTDAESKFTTIPAQLFIRSIGYKSMPLPGMK 346

Query: 184 SVGI 173
            VG+
Sbjct: 347 DVGV 350


>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = -3

Query: 244 PAPVSLKKVLKESSPPPMVLSVGIWPSGWMPCSRQ*SSQQALPIWTPAWPTCTEMHS 74
           P P+ LK +  E  P    L V IW     P  +       +PI TPA+P+    H+
Sbjct: 268 PQPILLKPI--EDGP----LQVRIWNPKLYPSDKA----HRMPIITPAYPSMCATHN 314


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 277 KIDEDSTGTCLPAPVSLKKVLKESSPPPMVLSVGIWPSG 161
           +I+E      L  P+   + L +++PP +V+ +G  P G
Sbjct: 831 EIEEKDLTKYLGPPIYTSQRLYDTTPPGVVMGLGWTPMG 869


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,839,432
Number of Sequences: 5004
Number of extensions: 36616
Number of successful extensions: 127
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)