Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1070
         (471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces po...    28   0.83 
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...    25   5.8  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   5.8  
SPAC1399.04c |||uracil phosphoribosyltransferase |Schizosaccharo...    25   5.8  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    25   7.7  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    25   7.7  

>SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 266

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +1

Query: 130 LYCTYPIA*TLLLLQSSKRCFTTLATGNTNQLAQITRVGKWRSKTGLVFQT-CISCGCEM 306
           +YC+ P    LL  +  K C         N+L  I  +  W + T  +  T CI CG + 
Sbjct: 173 VYCSRPGQPPLLKEELEKECPNVRVKSVQNRLVNIHDILDWDNVTVPLKDTLCIVCGSQK 232

Query: 307 PVSIV 321
            VS +
Sbjct: 233 FVSTI 237


>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
          scaffold protein Isu1|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 192

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 39 SRLTYHLKILAHYNKP 86
          SR  YH  +L HYN P
Sbjct: 50 SRRMYHKNVLDHYNNP 65


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -2

Query: 308 GISQPQEIQV*NTRPVFERHLPTRVI*AS*FVLPVAKVVKHLLLLCSRSKVQAI 147
           G S P+ +Q+   + +       R I    F+L   +   ++ LLC  S  QAI
Sbjct: 234 GESTPERVQLQIVKALLAAITSERTIIRHSFLLTAVRQTYNIFLLCKDSTTQAI 287


>SPAC1399.04c |||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 220

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 199 LATGNTNQLAQITRVGKWRSKTGLVFQTCISCGCEMPVSIVQRFSRRR 342
           LATGN+  LA  T + K   +  +VF   I+C  E   ++  +F + R
Sbjct: 143 LATGNSVILAIQTLINKGIPEENIVFVNLIACN-EGITNVFAKFPKLR 189


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 382 KMFFCSSRPLDGVNGAAKTV 323
           K+ F  SRPLDG+N  +K +
Sbjct: 541 KLKFFQSRPLDGLNKFSKKI 560


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 12  QKSHCGFDNSRLTYHLK 62
           +KSH  + NS+LTY LK
Sbjct: 768 EKSHIPYRNSKLTYLLK 784


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,009,810
Number of Sequences: 5004
Number of extensions: 39898
Number of successful extensions: 106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)