Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1070
         (471 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0629 - 4582045-4582140,4582218-4582480,4582584-4582704,458...    30   1.1  
01_01_0490 + 3620523-3623403,3623524-3623996                           28   3.3  
08_01_0570 - 5073138-5073410,5075386-5075530,5075561-5075754           28   4.4  
01_07_0269 - 42414345-42415328,42415419-42415551,42415939-424160...    28   4.4  
12_01_0628 - 5181814-5182344                                           27   5.8  
10_07_0086 - 12755485-12756540,12756994-12757283,12757391-12757643     27   5.8  
10_08_0804 + 20700414-20700723,20700813-20700924,20701380-207014...    27   7.6  

>06_01_0629 -
           4582045-4582140,4582218-4582480,4582584-4582704,
           4582833-4583171,4583208-4583245,4583355-4583670,
           4583753-4584006,4586417-4586546
          Length = 518

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 251 GVRKRVSCFKPVFLAVVKCPFPLYNGFRGAVN 346
           GVR+ + C   V+   +K   PL +GFR  VN
Sbjct: 51  GVRRNLGCLPEVYHKKLKIAVPLKHGFRAFVN 82


>01_01_0490 + 3620523-3623403,3623524-3623996
          Length = 1117

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 361  RPLDGVNGAAKTVVQWKRAFHNRKKYRFETRD 266
            RP++   G  +TVVQW R   +RK+   E  D
Sbjct: 989  RPIEAAFGEGQTVVQWVREHLHRKRDPAEVID 1020


>08_01_0570 - 5073138-5073410,5075386-5075530,5075561-5075754
          Length = 203

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 184 RCFTTLATGNTNQLAQITRVGKWRSKTGLVFQTCISCGCEMP 309
           R  TTL     ++++ + R  +W  + GL +Q+  S GC  P
Sbjct: 55  RLSTTLPLACCHRVSSVYR-SRWHCRLGLEYQSYSSSGCHRP 95


>01_07_0269 -
           42414345-42415328,42415419-42415551,42415939-42416007,
           42416459-42416672,42416785-42417040
          Length = 551

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = -1

Query: 255 TPF--TDTSDLS*LIRIASGQGSKAPFTTLQQKQGSGYRVGTVQSVIRN*EKIFLDKDKA 82
           TP+  TD  DL   I+  S + S +P+  L  ++  G ++ +++ V      +FL  D  
Sbjct: 205 TPYRNTDLRDLKLFIQ-KSAKESTSPYRQLNIEEPLGPQLRSIKIVEYPTINVFLPSDSC 263

Query: 81  YYSVQEFLN 55
            + V++F+N
Sbjct: 264 DFEVEKFVN 272


>12_01_0628 - 5181814-5182344
          Length = 176

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 343 NGAAKTVVQWKRAFHNRKKYRFETR 269
           +GA  TVV W+RA+H R+  R E R
Sbjct: 135 HGAQPTVV-WQRAWHGRRTARLEWR 158


>10_07_0086 - 12755485-12756540,12756994-12757283,12757391-12757643
          Length = 532

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 178 SKRCFTTLATGNTNQLAQITRVGKWRSKTG 267
           SKR FTT A GN  +  ++T+ G W++  G
Sbjct: 100 SKRQFTTKA-GNKRRPTRVTKGGTWKASGG 128


>10_08_0804 +
           20700414-20700723,20700813-20700924,20701380-20701467,
           20702530-20702910
          Length = 296

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 108 FLNFV*QIVLYLPYSLNLASAA 173
           FLNF   + +Y PYS+N  S A
Sbjct: 150 FLNFATSLAVYYPYSINYESHA 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,570,290
Number of Sequences: 37544
Number of extensions: 246336
Number of successful extensions: 463
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)